Table 2 LAMP primer sets used in this study
Target | Primer name | Sequences (5′à 3′) | References |
|---|---|---|---|
CTX-M groupe 1 | F3 | CACTGCGTCAGTTCACGC | Rivoarilala et al. [21] |
B3 | CACGGCCATCACTTTACTGG | ||
FIP | TTGCTGTACGTCCGCCGTTTGTTTTCAACCGTCACGCTGTTGT | ||
BIP | CAGTCGGGAGGAAGACTGGGTTTTTGCGCTCATCAGCACGATA | ||
LF | TACAGCGGCACACTTCCTA | ||
P. mirabilis (walR) | F3 | AAAAAACGCGGWTCTGCA | This study |
B3 | AAGACAGATAGAGCCAACG | ||
FIP | CTGTCGAGCTATGGGTATTAATCACTTTTATTGCGTAATTGGTTAAAARTC | ||
BIP | GTTAGTTGCGCTATCTTGTGCTTCTTTTGAACGTGATACATCGGTAGA | ||
LF | CCGCCATAGTACGTACTCGCCA | ||
E. coli | F3 | GCCATCTCCTGATGACG | Hill et al. [24] |
B3 | ATTTACCGCAGCCAGACG | ||
FIP | CTGGGGCGAGGTCGTGGTATTCCGACAAACACCACGAATT | ||
BIP | CATTTTGCAGCTGTACGCTCGCAGCCCATCATGAATGTTGCT | ||
LF | CTTTGTAACAACCTGTCATCGACA | ||
LB | ATCAATCTCGATATCCATGAAGGTG | ||
K. pneumoniae | F3 | GGATATCTGACCAGTCGG | Dong et al., [25] |
B3 | GGGTTTTGCGTAATGATCTG | ||
FIP | CGACGTACAGTGTTTCTGCAGTTTTAAAAAACAGGAAATCGTTGAGG | ||
BIP | CGGCGGTGGTGTTTCTGAATTTTGCGAATAATGCCATTACTTTC | ||
LB | GAAGACTGTTTCGTGCATGATGA | ||
E. faecalis | F3 | GCCGGAAATCGATGAAGA | Kato et al. [26] |
B3 | TCCAGCAACGTTGATTGT | ||
FIP | CACTTTTTGTTGTTGGTTTTCGCTTTATTATCTGCTTGGGGTGC | ||
BIP | ATCTGCAGACAAAGTAGTAATTGCTCCAAGCTTTTAAGCGTGTC | ||
LF | AAATGCTGCGCCAGCTCG | ||
| Â | LB | TCCAATGTGGAACTTAAACGTACC |