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Table 2. Microorganism detected by mNGS of 5 patients

From: Metagenomic next-generation sequencing for the early diagnosis of talaromycosis in HIV-uninfected patients: five cases report

Patient

Microorganism detected by mNGS

Pathogenic microorganism except Talaromyces marneffei

bacteria

reads

fungi

reads

virus

reads

others

reads

P1

Staphylococcus aureus

8

Talaromyces marneffei

6

Human-betaherpesvirus-5

18

-

-

Staphylococcus aureus

P2

–

–

Talaromyces marneffei

414

Human-betaherpesvirus-5

6

–

–

–

Human-gamma herpesvirus-4

2

P3

–

–

–

–

–

–

–

–

–

P4

–

–

Pneumocystis–jirovecii

7

–

–

–

–

–

P5

Veillonella parvula

190

Talaromyces marneffei

9

Human gammaherpesvirus 4

2

–

–

–

Veillonella atypica

149

Streptococcusparasanguinis

94

Streptococcus australis

13

Rothia aeria

55

Rothia mucilaginosa

46

Torque teno virus

2

Prevotella salivae

39

Prevotellamelaninogenica

28

Lautropia mirabilis

87

Lactobacillus salivarius

37