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Table 1 Comparative summary of species and lineage assignments from various tools and methods

From: Import and transmission of Mycobacterium orygis and Mycobacterium africanum, Norway

MTBC line-probe PhyResSE Mykrobe TB-profiler MASH
MAF MAF West African 1a or 1b MAF Lineage 5 MAF Lineage 5 MAF
MAF MAF West African 2 MAF Lineage 6 MAF Lineage 6 MAF
MAF “Clade 2” MAF animal clade A3 Bov_afri/bov M. orygis