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Table 1 Comparative summary of species and lineage assignments from various tools and methods

From: Import and transmission of Mycobacterium orygis and Mycobacterium africanum, Norway

MTBC line-probe

PhyResSE

Mykrobe

TB-profiler

MASH

MAF

MAF West African 1a or 1b

MAF Lineage 5

MAF Lineage 5

MAF

MAF

MAF West African 2

MAF Lineage 6

MAF Lineage 6

MAF

MAF

“Clade 2”

MAF animal clade A3

Bov_afri/bov

M. orygis