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Table 3 Pathogens co-detected by mNGS in both BALF and blood samples

From: Clinical metagenomics assessments improve diagnosis and outcomes in community-acquired pneumonia

Patient ID Pathogens Reads (BALF) Reads (Blood)
2 Acinetobacter baumannii 2782 68
5 Pneumocystis jirovecii 69 6
28 Stenotrophomonas maltophilia 543 10
Aspergillus fumigatus 19 10
31 Pneumocystis jirovecii 140 1
39 Staphylococcus aureus 134 400
44 Pneumocystis jirovecii 281 288
58 Nocardia cyriacigeorgica 114 8
75 Pneumocystis jirovecii 1552 4
77 Cytomegalovirus 20,352 28,100
Epstein-Barr virus 1610 102
Torque teno virus 24 85
86 Legionella pneumophila 8865 2234
97 Acinetobacter baumannii 239,490 22