Table 3 Pathogens co-detected by mNGS in both BALF and blood samples
From: Clinical metagenomics assessments improve diagnosis and outcomes in community-acquired pneumonia
Patient ID | Pathogens | Reads (BALF) | Reads (Blood) |
|---|---|---|---|
2 | Acinetobacter baumannii | 2782 | 68 |
5 | Pneumocystis jirovecii | 69 | 6 |
28 | Stenotrophomonas maltophilia | 543 | 10 |
Aspergillus fumigatus | 19 | 10 | |
31 | Pneumocystis jirovecii | 140 | 1 |
39 | Staphylococcus aureus | 134 | 400 |
44 | Pneumocystis jirovecii | 281 | 288 |
58 | Nocardia cyriacigeorgica | 114 | 8 |
75 | Pneumocystis jirovecii | 1552 | 4 |
77 | Cytomegalovirus | 20,352 | 28,100 |
Epstein-Barr virus | 1610 | 102 | |
Torque teno virus | 24 | 85 | |
86 | Legionella pneumophila | 8865 | 2234 |
97 | Acinetobacter baumannii | 239,490 | 22 |