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Table 1 Analysis of Mycobacterium tuberculosis isolates by whole genome sequencing

From: Application of whole-genome sequencing in a case study of renal tuberculosis in a child

 

Mycobacterium tuberculosis isolates

 

Father

Child

Isolation source

Sputum

Urine

Urine

Bronchial aspirate

Isolation date

February 4, 2004

September 5, 2016

September 6, 2016

September 9, 2016

Genome coverage (%)a

98.28

99.13

98.22

98.38

Average read length (bp)

213

173

205

188

Mean base quality

31.1

30.7

30.6

30.7

Mean depth

40.4

61.5

40.3

62.8

  1. a Mycobacterium tuberculosis H37RV genome