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Table 1 Primers and probes applied in this study

From: Evaluation of TaqMan Array card (TAC) for the detection of 28 respiratory pathogens

Pathogen

Target gene

Primer/probe sequence

Reference or Source

INF-A

M

F, AAGACCAATCCTGTCACCTCTGA

[2] (modified)

R, AAGCGTCTACGCTGCAGTCC

P, ACGCTCACCGTGCC

INF-B

HA

F, AAATACGGTGGATTAAACAAAAGCAA

[25] (modified)

R, CCAGCAATAGCTCCGAAGAAA

P, TGGGCAATTTCCTATGGC

PIV-1

HN

F, TGATTTAAACCCGGTAATTTCTCAT

[26]

R, CCTTGTTCCTGCAGCTATTACAGA

P, ACGACAACAGGAAATC

PIV-2

HN

F, AGGACTATGAAAACCATTTACCTAAGTGA

[26] (modified)

R, AAGCAAGTCTCAGTTCAGCTAGATCA

P, TGTTCAGTCACTGCTATAC

PIV-3

HN

F, AAAAGTTGATGAAAGATCAGATTATGCAT

[26] (modified)

R, CCGGGACACCCAGTTGTG

P, AAAGGCAAAATAATATTTCTC

HMPV-A

F

F, AGAGATGTAGGCACCACAACTGC

Beijing Genomics institution

R, CTGATCCTAGAGCCGTGCAAA

P, TTCATCATTGCAGCAAGA

HMPV-B

F

F, ACAATGGCAACTTTGCTTAAAGAA

Beijing Genomics institution

R, GATTATAGGTGTGTCTGGTGCTGAA

P, ATATTCCACAAAATCAGAGGC

HRV

5′ UTR

F, TTCCAGCCTGCGTGGC

[1] (modified)

R, GAAACACGGACACCCAAAGTAGTC

P, CCCCTGAATGYGGC

HEV

5′ UTR

F, GGTGYGAAGAGYCTATTGAGC

Beijing Genomics institution

R, ACGGACACCCAAAGTAGTCG

R, TCCGGCCCCTGAAT

HAdV

Hexon

F, CCCAGTGGTCTTACATGCACAT

[3] (modified)

R, GCCACGGTGGGGTTTCTAA

P, CCGGGTCTGGTGCAG

RSV-A

N

F, AGATCAACTTCTGTCATCCAGCAA

[25] (modified)

R, TTCTGCACATCATAATTAGGAGTATCAAT

P, CGGAGCACAGGAGAT

RSV-B

N

F, AAGATGCAAATCATAAATTCACAGGA

[27]

R, TGATATCCAGCATCTTTAAGTATCTTTATAGTG

P, CTGGACATAGCATATAAC

M. pneumoniae

P1

F, GCAGTTGCTGGCGCTAAGTT

Beijing Genomics institution

R, AAGCGAGGTACGGTAGCGGTAT

P, TGGTAGGGAACTCGTTTTA

C. pneumoniae

MOMP

F, CGTGGAGCCTTATGGGAATG

Beijing Genomics institution

R, CGTCTGTTGGCAAGGGGA

P, CAGTCCAAACCTAAAGTT

S. pneumoniae

lytA

F, ACGCAATCTAGCAGATGAAGCA

[1] (modified)

R, TCGTGCGTTTTAATTCCAGCT

P, AACGCTTGATACAGGGAG

M. tuberculosis

orfB

F, GGCTGTGGGTAGCAGACC

[28] (modified)

R, CGGGTCCAGATGGCTTG

P, ACCTGGGCAGGGTT

HBOV

NP1

F, AGAGGCTCGGGCTCATATCA

[29] (modified)

R, CACTTGGTCTGAGGTCTTCGAA

P, CAATCARCCACCTATCGTCT

Measles virus

P

F, GCAATTGGATCAACTGAAGGC

Beijing Genomics institution

R, AGAGTCAGCATCTTGGATTCCCT

P, ACAGCGGTGAAGCG

Rubella Virus

E1

F, ACGCCGCACGGACAACT

Beijing Genomics institution

R, TGTTGGTTGCCGGTGTAATTC

P, AGGTCCCGCCCGAC

Mumps virus

P

F, GCAATTGGATCAACTGAAGGC

Beijing Genomics institution

R, AGAGTCAGCATCTTGGATTCCCT

P, ACAGCGGTGAAGCG

Coxiella burnetii

ICD

F, AATTTGGAGCAAAGCCCTTAGA

Beijing Genomics institution

R, GTAAAAAGGCGTCGGCAATAAC

P, ACCCTGGCATGTCT

HCoV-229E

N

F, CAGTCAAATGGGCTGATGCA

[25] (modified)

R, CAAAGGGCTATAAAGAGAATAAGGTATTCT

P, AACGTGGTCGTCAGGG

HCoV-NL63

N

F, GCGTGTTCCTACCAGAGAGGAA

[25] (modified)

R, GCTGTGGAAAACCTTTGGCA

P, TGCTTTGGTCCTCGTGAT

HCoV-OC43

N

F, CGATGAGGCTATTCCGACTAGGT

[30] (modified)

R, CCTTCCTGAGCCTTCAATATAGTAACC

P, TGGCACGGTACTCC

HCoV-HKU

N

F, AGGGATCCTACTAYTCAAGAAGCTATCC

[3] (modified)

R, ATGAACGATTATTGGGTCCACG

P, CGCCTGGTACGATTT

Pan-Legionella

5S–23S

F, GTACTAATTGGCTGATTGTCTTGACC

[1] (modified)

R, CCTGGCGATGACCTACTTTCG

P, ACTCTTTACCAAACCTG

H. influenzae

bexA

F, GGACAAACATCACAAGCGGTTA

[1] (modified)

R, TGCGGTAGTGTTAGAAAATGGTATTATG

P, TTGTAGTATTGATACGCTTTGT

B. pertussis target I

IS481a

F, CAAGGCCGAACGCTTCAT

[1] (modified)

R, GAGTTCTGGTAGGTGTGAGCGTAA

P, CCTTGCGTGAGTGGG

B. pertussis target II

PtxA

F, GCCGCCAGCTCGTACTTC

[1] (modified)

R, GGATACGGCCGGCATTG

P, CGTCGACACTTATGGCGA

IPCO

  

ABI

RNP

RPP30

F, AGATTTGGACCTGCGAGCG

WHO (modified)

R, GAGCGGCTGTCTCCACAAGT

P, CTGAAGGCTCTGCGC