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Table 2 Avian influenza viruses and other viruses assessed in this study

From: Development and evaluation of a TaqMan MGB RT-PCR assay for detection of H5 and N8 subtype influenza virus

Virus

Gene accession number

Subtype

Ct values from real-time RT-PCR

Reference real-time RT-PCR

HA

NA

H5

N8

A/duck/Zhejiang/D1/2013(H1N2)

KY971115.1

KY971171.1

H1N2

No Ct

No Ct

24.97

A/chicken/Zhejiang/2CP25/2014 (H1N3)

KY971138.1

KY971194.1

H1N3

No Ct

No Ct

14.85

A/duck/Zhejiang/473/2013(H1N4)

KF357774.1

KF357767.1

H1N4

No Ct

No Ct

27.33

A/chicken/Zhejiang/51043/2015(H1N9)

KY971141.1

KY971197.1

H1N9

No Ct

No Ct

32.94

A/duck/Zhejiang/465/2013(H2N7)

KF357792.1

KF357789.1

H2N7

No Ct

No Ct

24.85

A/duck/Zhejiang/6D10/2013(H2N8)

KX394376.1

KX394378.1

H2N8

No Ct

26.66

16.49

A/duck/Zhejiang/4613/2013(H3N2)

KF357818.1

KF357811.1

H3N2

No Ct

No Ct

16.58

A/duck/Zhejiang/5/2011(H3N3)

JX051229.1

JX051231.1

H3N3

No Ct

No Ct

33.00

A/duck/Zhejiang/D1–3/2013(H3N6)

KJ439856.1

KJ439878.1

H3N6

No Ct

No Ct

25.87

A/duck/Zhejiang/4812/2013(H3N8)

KF357821.1

KF357810.1

H3N8

No Ct

20.72

21.98

A/duck/Zhejiang/727145/2014(H4N2)

KT589211.1

KT589257.1

H4N2

No Ct

38.67

13.88

A/duck/Zhejiang/409/2013(H4N6)

KT589221.1

KT589267.1

H4N6

No Ct

No Ct

19.33

A/goose/Zhejiang/727098/2014(H5N1) (2.3.2)

KU042744.1

KU042802.1

H5N1

16.93

No Ct

10.83

A/duck/Zhejiang/6DK19/2013(H5N2) (2.3.4.4b)

KJ933377.1

KJ933379.1

H5N2

19.22

No Ct

32.11

A/duck/Zhejiang/6D2/2013(H5N6) (2.3.4.4b)

KJ807780.1

KJ807784.1

H5N6

21.08

No Ct

18.25

A/duck/Zhejiang/W24/2013(H5N8) (2.3.4.4b)

KJ476669.1

KJ476673.1

H5N8

15.70

16.00

26.01

A/duck/Zhejiang/6D18/2013(H5N8) (2.3.4.4b)

KJ476670.1

KJ476674.1

H5N8

18.39

20.82

18.92

A/duck/Zhejiang/925019/2014(H5N8) (2.3.4.4b)

KU042767.1

KU042825.1

H5N8

27.82

25.29

24.28

A/chicken/Zhejiang/1664/2017(H6N1)

MG063436.1

MG063440.1

H6N1

No Ct

No Ct

17.92

A/duck/Zhejiang/727038/2014(H6N2)

KT423148.1

KT423162.1

H6N2

No Ct

No Ct

23.29

A/chicken/Zhejiang/727018/2014(H6N6)

KU050771.1

KU050795.1

H6N6

No Ct

No Ct

29.02

A/duck/Zhejiang/DK16/2013(H7N3)

KC961629.1

KF042068.1

H7N3

No Ct

No Ct

18.36

A/chicken/Jiangxi/C25/2014(H7N7)

KM593186.1

KM593188.1

H7N7

No Ct

No Ct

16.29

A/chicken/Zhejiang/DTID-ZJU01/2013(H7N9)

KC899669.1

KC899671.1

H7N9

No Ct

40.21

25.91

A/chicken/Zhejiang/221/2016(H9N2)

KY056291.1

KY056305.1

H9N2

No Ct

39.79

17.22

A/duck/Zhejiang/6D20/2013(H10N2)

KP063197.1

KP063199.1

H10N2

No Ct

No Ct

22.87

A/chicken/Zhejiang/8615/2016(H10N3)

MG366506.1

MG366520

H10N3

No Ct

No Ct

20.23

A/chicken/Zhejiang/2CP8/2014(H10N7)

KP412451.1

KP412454.1

H10N7

No Ct

No Ct

16.98

A/chicken/Zhejiang/102615/2016(H10N8)

MG366509.1

MG366523.1

H10N8

No Ct

17.52

18.98

A/chicken/Zhejiang/102619/2016(H10N8)

MG366517.1

MG366524.1

H10N8

No Ct

18.36

18.00

A/chicken/Zhejiang/102622/2016(H10N8)

MG366511.1

MG366525.1

H10N8

No Ct

26.02

26.91

A/chicken/Zhejiang/121711/2016(H10N8)

MG366512.1

MG366526.1

H10N8

No Ct

18.82

12.99

A/duck/Zhejiang/727D2/2013(H11N3)

KX028817.1

KX028829.1

H11N3

No Ct

No Ct

18.29

A/duck/Zhejiang/71750/2013(H11N9)

KR864829.1

KR864831.1

H11N9

No Ct

No Ct

23.09

Newcastle disease virus (NDV)

–

–

La Sota

No Ct

No Ct

No Ct

Infectious bronchitis virus (IBV)

–

–

H120

No Ct

No Ct

No Ct

Infectious bursal disease virus (IBDV)

–

–

NF8

No Ct

No Ct

No Ct

  1. Note: Assay results considered positive are indicated by Ct values in bold