Virus | Gene accession number | Subtype | Ct values from real-time RT-PCR | Reference real-time RT-PCR | ||
---|---|---|---|---|---|---|
HA | NA | H5 | N8 | |||
A/duck/Zhejiang/D1/2013(H1N2) | KY971115.1 | KY971171.1 | H1N2 | No Ct | No Ct | 24.97 |
A/chicken/Zhejiang/2CP25/2014 (H1N3) | KY971138.1 | KY971194.1 | H1N3 | No Ct | No Ct | 14.85 |
A/duck/Zhejiang/473/2013(H1N4) | KF357774.1 | KF357767.1 | H1N4 | No Ct | No Ct | 27.33 |
A/chicken/Zhejiang/51043/2015(H1N9) | KY971141.1 | KY971197.1 | H1N9 | No Ct | No Ct | 32.94 |
A/duck/Zhejiang/465/2013(H2N7) | KF357792.1 | KF357789.1 | H2N7 | No Ct | No Ct | 24.85 |
A/duck/Zhejiang/6D10/2013(H2N8) | KX394376.1 | KX394378.1 | H2N8 | No Ct | 26.66 | 16.49 |
A/duck/Zhejiang/4613/2013(H3N2) | KF357818.1 | KF357811.1 | H3N2 | No Ct | No Ct | 16.58 |
A/duck/Zhejiang/5/2011(H3N3) | JX051229.1 | JX051231.1 | H3N3 | No Ct | No Ct | 33.00 |
A/duck/Zhejiang/D1–3/2013(H3N6) | KJ439856.1 | KJ439878.1 | H3N6 | No Ct | No Ct | 25.87 |
A/duck/Zhejiang/4812/2013(H3N8) | KF357821.1 | KF357810.1 | H3N8 | No Ct | 20.72 | 21.98 |
A/duck/Zhejiang/727145/2014(H4N2) | KT589211.1 | KT589257.1 | H4N2 | No Ct | 38.67 | 13.88 |
A/duck/Zhejiang/409/2013(H4N6) | KT589221.1 | KT589267.1 | H4N6 | No Ct | No Ct | 19.33 |
A/goose/Zhejiang/727098/2014(H5N1) (2.3.2) | KU042744.1 | KU042802.1 | H5N1 | 16.93 | No Ct | 10.83 |
A/duck/Zhejiang/6DK19/2013(H5N2) (2.3.4.4b) | KJ933377.1 | KJ933379.1 | H5N2 | 19.22 | No Ct | 32.11 |
A/duck/Zhejiang/6D2/2013(H5N6) (2.3.4.4b) | KJ807780.1 | KJ807784.1 | H5N6 | 21.08 | No Ct | 18.25 |
A/duck/Zhejiang/W24/2013(H5N8) (2.3.4.4b) | KJ476669.1 | KJ476673.1 | H5N8 | 15.70 | 16.00 | 26.01 |
A/duck/Zhejiang/6D18/2013(H5N8) (2.3.4.4b) | KJ476670.1 | KJ476674.1 | H5N8 | 18.39 | 20.82 | 18.92 |
A/duck/Zhejiang/925019/2014(H5N8) (2.3.4.4b) | KU042767.1 | KU042825.1 | H5N8 | 27.82 | 25.29 | 24.28 |
A/chicken/Zhejiang/1664/2017(H6N1) | MG063436.1 | MG063440.1 | H6N1 | No Ct | No Ct | 17.92 |
A/duck/Zhejiang/727038/2014(H6N2) | KT423148.1 | KT423162.1 | H6N2 | No Ct | No Ct | 23.29 |
A/chicken/Zhejiang/727018/2014(H6N6) | KU050771.1 | KU050795.1 | H6N6 | No Ct | No Ct | 29.02 |
A/duck/Zhejiang/DK16/2013(H7N3) | KC961629.1 | KF042068.1 | H7N3 | No Ct | No Ct | 18.36 |
A/chicken/Jiangxi/C25/2014(H7N7) | KM593186.1 | KM593188.1 | H7N7 | No Ct | No Ct | 16.29 |
A/chicken/Zhejiang/DTID-ZJU01/2013(H7N9) | KC899669.1 | KC899671.1 | H7N9 | No Ct | 40.21 | 25.91 |
A/chicken/Zhejiang/221/2016(H9N2) | KY056291.1 | KY056305.1 | H9N2 | No Ct | 39.79 | 17.22 |
A/duck/Zhejiang/6D20/2013(H10N2) | KP063197.1 | KP063199.1 | H10N2 | No Ct | No Ct | 22.87 |
A/chicken/Zhejiang/8615/2016(H10N3) | MG366506.1 | MG366520 | H10N3 | No Ct | No Ct | 20.23 |
A/chicken/Zhejiang/2CP8/2014(H10N7) | KP412451.1 | KP412454.1 | H10N7 | No Ct | No Ct | 16.98 |
A/chicken/Zhejiang/102615/2016(H10N8) | MG366509.1 | MG366523.1 | H10N8 | No Ct | 17.52 | 18.98 |
A/chicken/Zhejiang/102619/2016(H10N8) | MG366517.1 | MG366524.1 | H10N8 | No Ct | 18.36 | 18.00 |
A/chicken/Zhejiang/102622/2016(H10N8) | MG366511.1 | MG366525.1 | H10N8 | No Ct | 26.02 | 26.91 |
A/chicken/Zhejiang/121711/2016(H10N8) | MG366512.1 | MG366526.1 | H10N8 | No Ct | 18.82 | 12.99 |
A/duck/Zhejiang/727D2/2013(H11N3) | KX028817.1 | KX028829.1 | H11N3 | No Ct | No Ct | 18.29 |
A/duck/Zhejiang/71750/2013(H11N9) | KR864829.1 | KR864831.1 | H11N9 | No Ct | No Ct | 23.09 |
Newcastle disease virus (NDV) | – | – | La Sota | No Ct | No Ct | No Ct |
Infectious bronchitis virus (IBV) | – | – | H120 | No Ct | No Ct | No Ct |
Infectious bursal disease virus (IBDV) | – | – | NF8 | No Ct | No Ct | No Ct |