Case No. | Pathogen | Unique reads | Percentage, % | Genome Coverage, % | Read Depth (X) |
---|
1 | varicella zoster virus | 17,137 | 100 | 99.73 | 17.90 |
2 | varicella zoster virus | 13,190 | 100 | 98.83 | 11.87 |
3 | varicella zoster virus | 1330 | 100 | 34.77 | 1.25 |
4 | varicella zoster virus | 102 | 96.23 | 4.32 | 1.03 |
- Note: In case 1, 2, and 3, only VZV has been detected by NGS. So, the percentage is 100% for each of them. In case 4, there were 102 reads of VZV and 4 reads of Human parvovirus B19 detected by NGS (Additional file 5). So, the percentage is 96.23% (102/106) for case 4