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Table 1 Sequences of primers sets used and targeted genes

From: Molecular prevalence of intestinal parasites infections in children with diarrhea in Franceville, Southeast of Gabon

Intestinal parasiteNamesPrimers (5′ → 3′)Target regionReference
Protozoa
Cryptosporidium parvum/hominis1PSFAAC TTT AGC TCC AGT TGA GAA AGT ACT Chsp70 gene(Garces-Sanchez, Wilderer et al. 2009)
1PSRCAT GGC TCT TTA CCG TTA AAG AAT TCC
Blastocystis hominisBH1GCT TAT CTG GTT GAT CCT GCC AGT16 like RNA(Init, Foead et al. 2007)
BH2TGA TCC TTC CGC AGG TTC ACC TAC A
Cystoisospora belliIb213FGGA TAT TCC CTG CAG CAT GT5,8S rRNA/ITS2(Taniuchi, Verweij et al. 2011)
Ib213RCGG GAC ACA ACT CAA CAC TG
Encephalitozoon intestinalisEint214FCAC CAG GTT GAT TCT GCC TGA CSSU rRNA(Verweij, Ten Hove et al. 2007)
Eint214RCTA GTT AGG CCA TTA CCC TAA CTA CCA
Enterocytozoon bieneusiEbITS-89FTGT GTA GGC GTG AGA GTG TAT CTGSSU rRNA(Verweij, Ten Hove et al. 2007)
EbITS-191RCAT CCA ACC ATC ACG TAC CAA TC
Dientamoeba fragilisDFpn_1fGCC AAG GAA GCA CAC TAT GGSSU rRNA(Roser, Nejsum et al. 2013)
DFpn_364rGTA AGT TTC GCG CCT GCT
Trichomonas intestinalisTH3TGT AAA CGA TGC CGA CAG AGSSU rRNA(Crucitti, Abdellati et al. 2004)
TH5CAA CAC TGA AGC CAA TGC GAG C
Entamoeba histolyticaEnthFATG GCC AAT TCA TTC AAT GASSU rRNA(Suzuki, Kobayashi et al. 2008)
EnthRTAC TTA CAT AAA GTC TTC AAA ATG T
Entamoeba disparEntdFGTT AGT TAT CTA ATT TCG ATT AGA ACSSU rRNA(Suzuki, Kobayashi et al. 2008)
EntdRACA CCA CTT ACT ATC CCT ACC TA
Entamoeba hartmanniEhartFGTG AAG AGA AAG GAT ATC CAA AGTSSU rRNA(Suzuki, Kobayashi et al. 2008)
EhartRATA TCA TTT TCA ACT ACG AGC
Helminths
Ascaris lumbricoidesAlum96FGTA ATA GCA GTC GGC GGT TTC TTITS1(Wiria, Prasetyani et al. 2010)
Alum183RGCC CAA CAT GCC ACC TAT TC
Enterobius vermicularisEVpn_1fCAA CAC TTG CAC GTC TCT TCA5S rRNA(Roser, Nejsum et al. 2013)
EVpn_195rATT GCT CGT TTG CCG ATT AT
Trichuris trichiuraTtFTTG AAA CGA CTT GCT CAT CAA CTT18S(Liu, Gratz et al. 2013)
TtRCTG ATT CTC CGT TAA CCG TTG TC
Strongyloides stercoralisStro-1530FGAA TTC CAA GTA AAC GTA AGT CAT TAG C18S(Verweij, Canales et al. 2009)
Stro-1630RTGC CTC TGG ATA TTG CTC AGT TC
Ancylostoma duodenalisAd125FGAA TGA CAG CAA ACT CGT TGT TGITS2(Verweij, Brienen et al. 2007)
Ad195RATA CTA GCC ACT GCC GAA ACG T
Necator americanusNa58FCTG TTT GTC GAA CGG TAC TTG CITS2(Verweij, Brienen et al. 2007)
Na158RATA ACA GCG TGC ACA TGT TGC
Schistosoma mansoniSmcyt748FCCC TGC CAA ATG AAG AGA AAA CMitochondrial DNA(ten Hove, Verweij et al. 2008)
Smcyt847RTGG GTG TGG AAT TGG TTG AAC
Schistosoma intercalatumSh110TTC CTC CAA CTA CCA TCT TAT CTCSh110(Abbasi, King et al. 2007)
Sm-SLAAC CGT CAC GGT TTT ACT CTT GTG
Hymenolepsis sp.Pr-aTGG TTT TTT GTG CAT CCT GAG GTT TACOI(Muehlenbachs, Bhatnagar et al. 2015)
Pr-bAGA AAG AAC GTA ATG AAA ATG AGC AAC