Table 1 Coverage statistics for Listeria monocytogenes from h 20 to h 40 of enrichments
From: Quasimetagenomic source tracking of Listeria monocytogenes from naturally contaminated ice cream
Hour | Rep | Number of Reads | Reads Mapped to L. mono | Average Coverage |
|---|---|---|---|---|
20 | 1 | 2.2E+ 06 | 1.66% | 1.57X |
20 | 2 | 2.6E+ 06 | 1.44% | 1.62X |
20 | 3 | 2.3E+ 06 | 1.27% | 1.28X |
20 | 4 | 2.7E+ 06 | 1.98% | 2.23X |
Avg | 2.4E+ 06 | 1.60% | 1.68X | |
24 | 1 | 1.7E+ 06 | 11.82% | 9.08X |
24 | 2 | 1.7E+ 06 | 15.12% | 12.03X |
24 | 3 | 2.1E+ 06 | 18.07% | 15.50X |
24 | 4 | 2.3E+ 06 | 15.32% | 14.34X |
Avg | 2.0E+ 06 | 15.10% | 12.74X | |
28 | 1 | 1.9E+ 06 | 51.80% | 41.27X |
28 | 2 | 1.5E+ 06 | 54.90% | 33.99X |
28 | 3 | 1.1E+ 06 | 51.74% | 25.40X |
28 | 4 | 1.0E+ 06 | 56.93% | 26.83X |
Avg | 1.4E+ 06 | 53.84% | 31.87X | |
32 | 1 | 1.4E+ 06 | 87.44% | 49.47X |
32 | 2 | 9.1E+ 05 | 88.99% | 34.97X |
32 | 3 | 1.6E+ 06 | 78.56% | 52.97X |
32 | 4 | 1.4E+ 06 | 88.78% | 54.78X |
Avg | 1.3E+ 06 | 85.90% | 48.05X | |
36 | 1 | 8.8E+ 05 | 96.14% | 58.54X |
36 | 2 | 6.2E+ 05 | 84.28% | 37.91X |
36 | 3 | 1.1E+ 05 | 89.32% | 4.45X |
36 | 4 | 1.1E+ 06 | 96.01% | 63.27X |
Avg | 6.7E+ 05 | 91.40% | 41.04X | |
40 | 1 | 9.0E+ 05 | 97.78% | 51.25X |
40 | 2 | 4.1E+ 05 | 89.68% | 26.50X |
40 | 3 | 1.0E+ 06 | 76.92% | 51.79X |
40 | 4 | 1.4E+ 06 | 96.94% | 81.45X |
Avg | 9.4E+ 05 | 90.30% | 52.75X |