Table 1 Summary of next generation sequencing data from urine of infants with congenital CMV
No. of patient samples | 30 |
No of bases sequenced | 7.4 × 109 |
Average reads mapped to reference per sample | 2.1 × 106 |
Average maximum depth | 44,063 |
Average depth | 1468 |
Average genome coverage | 93% |
Total variants | 172,171 |
Unique variants | 42,846 |
Single nucleotide variants (SNV) | 29,306 |
Multi-nucleotide variants (MNV) | 2517 |
Insertions | 1905 |
Deletions | 1204 |
Nucleotide replacements | 174 |
Urine Viral Load Median (range) | 16,424 (69–6.4 × 105)IU/mL |