Table 1 Metadata and percent of genome that was able to be called unambiguously for 19 samples that amplified sufficiently to attempt sequencing
Strain Name | Collection Date | Ct Value | Municipality | Department | Coverage |
|---|---|---|---|---|---|
COL/FH01/2016 | 2016-02-24 | Positive | Montería | Córdoba | 4.1% |
COL/FH02/2016 | 2016-02-29 | Positive | Montería | Córdoba | 94.3% |
COL/FH03/2016 | 2016-03-09 | Positive | Ibagué | Tolima | 94.3% |
Aedes_aegypti/COL/FH04/2016 | 2016-01-29 | Positive | Montería | Córdoba | 96.1% |
COL/FH05/2016 | 2016-07-27 | 16 | Belén de Umbría | Risaralda | 96.1% |
COL/FH06/2016 | 2016-05-03 | 22 | Barranquilla | Atlántico | 0.0% |
COL/FH07/2016 | 2016-05-16 | 23 | Pitalito | Huila | 55.7% |
COL/FH08/2016 | 2016-08-25 | Positive | Cali | Valle del Cauca | 0.0% |
COL/FH09/2016 | 2016-11-02 | Positive | Cali | Valle del Cauca | 94.3% |
COL/FH10/2015 | 2015-12-16 | 24.72 | Girardot | Cundinamarca | 0.0% |
COL/FH11/2016 | 2016-02-10 | Positive | Taminango | Nariño | 0.0% |
COL/FH12/2016 | 2016-03-22 | 24.46 | Villagarzón | Putumayo | 0.0% |
COL/FH13/2016 | 2016-04-01 | 27.56 | San Andrés | San Andrés | 10.4% |
COL/FH14/2016 | 2016-05-26 | 21 | Villavicencio | Meta | 35.5% |
COL/FH15/2016 | 2016-05-12 | 23.85 | Imported Case | Imported Case | 21.0% |
COL/FH16/2016 | 2016-06-22 | 24 | Cali | Valle del Cauca | 81.8% |
COL/FH17/2016 | 2016-06-27 | Positive | Barranquilla | Atlántico | 0.0% |
COL/FH18/2016 | 2016-08-08 | Positive | Barranquilla | Atlántico | 0.0% |
COL/FH19/2016 | 2016-08-30 | Positive | Cali | Valle del Cauca | 81.8% |