1. Bronchofiberscopy | ||
PCR tests for Treponema pallidum | ||
Bronchoalveolar lavage | Undetected | |
TBB | Detected (tpp47-PCR and polA-PCR) | |
Culture tests for bacteria and mycobacteria | ||
Bronchoalveolar lavage | Undetected | |
Lavage of forceps in TBB | Undetected | |
2. Surgery | ||
Real-time PCR tests for Treponema pallidum | Undetected | |
Culture test for bacteria in pus inside the abscess | Undetected | |
Real-time PCR tests for multi-microbes [17] | ||
Number | Bacteria name | Quantity |
1 | Staphylococcus aureus | Undetected |
2 | Bacillus anthracis | Undetected |
3 | Listeria monocytogenes | Undetected |
4 | Streptococcus pyogenes | Undetected |
5 | Streptococcus agalactiae | Undetected |
6 | Streptococcus mutans | Undetected |
7 | Streptococcus sobrinus | Undetected |
8 | Streptococcus sanguinis | Undetected |
9 | Streptococcus oralis | Undetected |
10 | Streptococcus salivaris | Undetected |
11 | Streptococcus pneumoniae | Undetected |
12 | Enterococcus faecalis | Undetected |
13 | Enterococcus faecium | Undetected |
14 | Clostridium tetani | Undetected |
15 | Clostridium difficile | Undetected |
16 | Peptostreptococcus anaerobius | Undetected |
17 | Actinomyces | Undetected |
18 | Corynebacterium diphtheriae | Undetected |
19 | Mycobacterium tuberculosis | Undetected |
20 | Mycobacterium laprae | Undetected |
21 | Mycobacterium chelonae | Undetected |
22 | Mycobacterium kansasii | Undetected |
23 | Mycobacterium avium complex | Undetected |
24 | Nocardia asteroids | Undetected |
25 | Bacteroides fragills | Undetected |
26 | Elizabethkingia meningosepticum | Undetected |
27 | Campylobacter jejuni | Undetected |
28 | Helicobacter cinaedi | Undetected |
29 | Helicobacter pylori | Undetected |
30 | Rickettsia prowazekii | Undetected |
31 | Rickettsia japonica | Undetected |
32 | Orientia tsutsugamushi | Undetected |
33 | Bartonella henselae | Undetected |
34 | Brucella | Undetected |
35 | Bordetella pertussis | Undetected |
36 | Burkhoderia mallei | Undetected |
37 | Burkhoderia cepacian | Undetected |
38 | Neisseria gonorrhoeae | Undetected |
39 | Neisseria meningitidis | Undetected |
40 | Francisella tularensis | Undetected |
41 | Legionella pneumophilia | Undetected |
42 | Moraxella catarrhalis | Undetected |
43 | Pseudomonas aeruginosa | Undetected |
44 | Acinetobacter baumannii | Undetected |
45 | Aeromonas hydrophia | Undetected |
46 | Vibrio cholerae | Undetected |
47 | Vibrio parahaemolyticus | Undetected |
48 | Vibrio vulnificus | Undetected |
49 | Haemophilus influenzae | Undetected |
50 | Escherichia coli | Undetected |
51 | Salmonella enterica | Undetected |
52 | Shigella | Undetected |
53 | Klebsiella pneumonia | Undetected |
54 | Yersinia psttis | Undetected |
55 | Yersinia enterocolitica | Undetected |
56 | Citrobacter freundii | Undetected |
57 | Proteus mirabilis | Undetected |
58 | Morganella morganii | Undetected |
59 | Providencia | Undetected |
60 | Mycoplasma pneumoniae | Undetected |
61 | Fusobacterium nucleatum | Undetected |
62 | Leptospira interrogans | Undetected |
63 | Chlamydia psittaci | Undetected |
64 | Chlamydia trachomatis | Undetected |
65 | Chlamydia pneumoniae | Undetected |
66 | Aspergillus fumigatus | Undetected |
67 | Aspergillus nigar | Undetected |
68 | Aspergillus flavus | Undetected |
69 | Cryptococcus | Undetected |
70 | Histoplasma | Undetected |
71 | Trichosporon | Undetected |
72 | Mucor | Undetected |
73 | Coccidioides | Undetected |
74 | Propionibacterium acnes | Detected (not significant) |
75 | Stenotrophomonas maltophilia | Detected (not significant) |
76 | Candida albicans | Detected (not significant) |