Table 3 Comparison of sensitivity in detection of HPV 16 from different samples
From: DisV-HPV16, versatile and powerful software to detect HPV in RNA sequencing data
Subtype of HPV (n) | Sample | Software | ||
|---|---|---|---|---|
VirusSeq | ViromeScan | DisV-HPV16 | ||
HPV16 (14) | SRR2932830 | Over time | HPV16 | HPV16 |
SRR2932831 | Over time | HPV16 | HPV16 | |
SRR2932832 | Over time | HPV16 | HPV16 | |
SRR2932833 | Over time | HPV16 | HPV16 | |
SRR2932834 | Over time | HPV16 | HPV16 | |
SRR2932835 | Over time | HPV16 | HPV16 | |
SRR2932839 | Over time | HPV16 | HPV16 | |
SRR2932840 | Over time | HPV16 | HPV16 | |
SRR2932842 | Over time | HPV16 | HPV16 | |
SRR2932843 | Over time | HPV16 | HPV16 | |
SRR2932844 | Over time | HPV16 | HPV16 | |
SRR2932845 | Over time | HPV16 | HPV16 | |
SRR2932846 | Over time | HPV16 | HPV16 | |
SRR2932847 | Over time | HPV16 | HPV16 | |
HPV18 (1) | SRR2932837 | Over time | HPV18 | HPV18 |
HPV33 (1) | SRR2932841 | Over time | HPV33 | HPV16/HPV33 |
HPV35 (2) | SRR2932836 | Over time | HPV35 | HPV35 |
SRR2932838 | Over time | HPV35 | HPV16/HPV35 | |