Table 2 NGS (next-generation sequencing) of Salmonella Paratyphi
Best_Hit_ARO | Drug class | Best_Identities | AMR gene family | SNPs_in_Best_Hit_ARO | ||
|---|---|---|---|---|---|---|
Salmonella enterica gyrA conferring resistance to fluoroquinolones | nybomycin; fluoroquinolone antibiotic | 99.89 | fluoroquinolone resistant gyrA | S83F | ||
mdsC | carbapenem; monobactam; cephamycin; penam; penem ;phenicol antibiotic; cephalosporin | 100 | RND antibiotic efflux pump | |||
CRP | macrolide antibiotic; fluoroquinolone antibiotic; penam | 98.57 | RND antibiotic efflux pump | |||
MdtK | fluoroquinolone antibiotic | 98.95 | MATE transporter | |||
AAC(6′)-Iy | aminoglycoside antibiotic | 98.62 | AAC(6′) | |||
sdiA | triclosan; glycylcycline; rifamycin antibiotic; phenicol antibiotic ;fluoroquinolone antibiotic; cephalosporin; tetracycline antibiotic; penam | 99.17 | RND antibiotic efflux pump | |||