From: The respiratory microbiota: new insights into pulmonary tuberculosis
Study | Respiratory microbiota | Method | Sequencing region of 16 s RNA | |||
---|---|---|---|---|---|---|
TB patients | Healthy Controls | |||||
Phyla | Genera | Phyla | Genera | |||
Cheung et al | Proteobacteria*, Bacteroidetes*, Actinobacteria, Fusobacteria, Firmicutes | Neisseria* Streptococcus Prevotella*, Lactococcus, Pseudomonas, Enterobacteria | Proteobacteria Bacteroidetes, ActinobacteriaFusobacteria Firmicutes* | Streptococcus Neisseria Prevotella, Lactococcus*, Pseudomonas*, Enterobacter* | Roche/454 | V1-V2 |
Wu et al | Firmicutes* Actinobacteria*, Spirochaetes*, Bacteroidetes, Fusobacteria, Cyanobacteria−Thermi−Acidobacteria− | Prevotella, LeptotrichiaTreponema, Catonella Neisseria, Coprococcus Streptococcus*,Gramulicatella*, Pseudomonas*, Haloplasma*,Bergeyella** Sharpea** | Firmicutes, Actinobacteria Spirochaetes Bacteroidetes* Fusobacteria* Cyanobacteria − Thermi − Acidobacteria- | Prevotella*, Leptotrichia*Treponema*Catonella* Coprococcus* Streptococcus Neisseria, Gramulicatella Pseudomonas, Haloplasma | Roche/454 | V1-V2 |
Krishna et al | Firmicutes*, Actinobacteria* Bacteriodes, Proteobacteria, Fusobacteria | Streptococcus, Neisseria, Veillonella Unclassified-Gammaproteobacteria Haemophilus, Actinobacillus Rothia *, Leuconosto* Lactobacillus*, Corynebacterium*, Atopobium*, Bacillus*, Acinetobacter* | Firmicutes, Actinobacteria Bacteriodes, Proteobacteria* Fusobacteria* | Streptococcus , Neisseria, Veillonella Unclassified-Gammaproteobacteria Haemophilus, Actinobacillus*, Rothia Leuconostoc, Lactobacillus Corynebacterium, Atopobium, Bacillus Acinetobacter* | Ion Torrent | V6-V7 |
Cui et al | Firmicutes, Bacteroidetes, ProteobacteriaCrenarchaeota Actinobacteria, Chlamydiae Chloroflexi, Cyanobacteria/Chloroplast Deinococcus-Thermus*, Elusimicrobia, Euryarchaeota SR1, Spirochaetes, Synergistetes, Tenericute Fusobacteria, Aquificae** Caldiserica**, Gemmatimonadetes**, Lentisphaerae** Planctomycetes** Thermodesulfobacteria**, Verrucomicrobia** | Phenylobacterium* Stenotrophomona*, Cupriavidus* Sphingomonas*, Mobilicoccus* Brevundimonas* Brevibacillus* Diaphorobacter* Thermus**, Pelomonas** Methylobacterium**, Comamonas**, Lactobacillus** Thermobacillus**, Aur tidibacter**, Lapillicoccus** Devriesea** | Firmicutes Bacteroidetes*ProteobacteriaCrenarchaeota Actinobacteria Chlamydiae, Chloroflexi, Cyanobacteria/Chloroplast Deinococcus-Thermus Elusimicrobia, Euryarchaeota SR1, Spirochaetes, Synergistetes, Tenericute Fusobacteria* | Phenylobacterium, Stenotrophomonas Cupriavidus SphingomonasMobilicoccusBrevundimonasBrevibacillus Diaphorobacter | Roche/454 | V3 |
Botero et al | Firmicutes, BacteroidetesProteobacteria, Actinobacteria*. Fusobacteria, Spirochaetes SR1, Gemmatimonadetes** Chloroflexi, Acidobacteria** Tenericutes, Unclassified bacteria Ascomycota, Unclassified fungi | Â | Firmicutes, BacteroidetesProteobacteria, Actinobacteria, Fusobacteria, Spirochaetes SR1, Chloroflexi Tenericutes, Unclassified bacteria, Ascomycota Unclassified fungi | Â | Roche/454 | V1-V2 |