Table 1 Sources of data on Salmonella used in this study
Name data source | Acronym | Dates included | Samples included | Reason for sampling | Molecular data | No. isolates w. MLVA/Phage (%) | No. isolates |
|---|---|---|---|---|---|---|---|
Notifiable Conditions Incident Management System, NSW Health | NCIMS | 2001–2015 | Human | Diagnostic | MLVA and Phage | MLVA: 14550 (38.2) Phage: 14996 (39.4) | 38,106 |
New South Wales Food Authority, Department of Primary Industries | NSWFA | 2010–2017 | Food, Environment | Surveillance, Outbreak- investigation | MLVA | 126 (12.5) | 1006 |
State Veterinary Diagnostic Laboratory, Department of Primary Industries | SVDL | 2006–2015 | Livestock, Wildlife (captive [zoo] and free-ranging) | Diagnostic, Research, Surveillance | Phage | 25 (4.4) | 569 |
Australian Registry Wildlife Health, Taronga Zoo | ARWH | 1989–2015 | Wildlife (captive [zoo] and free-ranging) | Diagnostic | Phage | 103 (21.7) | 475 |
Electronic Wildlife Health Information System, Wildlife Health Australia | eWHIS | 2012–2016 | Wildlife (free-ranging) | Diagnostic, Research, Surveillance | Phage | 2 (40.0) | 5 |
IDEXX Laboratories Pty Ltd | IDEXX | 2012–2017 | Dog and cat | Diagnostic | None |  | 407 |
National Enteric Pathogen Surveillance System, Microbiology Diagnostic Unit | NEPSS | 2006–2017 | Non-human | All | None |  | 9304 |
| Â | Â | Â | Â | Â | Â | Total isolates | 49,872 |