From: Genomic sequencing is required for identification of tuberculosis transmission in Hawaii
Cluster Name | Cluster Family | # of Isolates | # of WGS Isolates | # of SNP Loci in Cluster | SNP Range | Transmission Linked? |
---|---|---|---|---|---|---|
Large Clusters Identified by Identical Genetic Fingerprints | ||||||
Manila Cluster 1 | Manila | 23 | 3 | 178 | 73–148 | No |
Manila Cluster 2 | Manila | 24 | 2 | 161 | – | No |
Beijing Cluster 1 | Beijing | 11 | 4 | 63 | 0–52 | Partial |
Beijing Cluster 2 | Beijing | 7 | 7 | 0 | – | Yes |
Clusters Identified by Shared Uncommon Spoligotypes | ||||||
Manila-like Cluster 1 | Manila | 2 | 2 | 3 | – | Yes |
Manila-like Cluster 2 | Manila | 2 | 2 | 4 | – | Yes |
Beijing Cluster 5 | Beijing | 2 | 2 | 1 | – | Yes |
Manila-like Cluster 3 | Manila-like | 3 | 3 | 3 | 1–3 | Yes |
H3 Cluster 1 | H3 | 3 (1) | 3 | 1230 | 3–1230 | Partial |
Epidemiologically Identified Putative Clusters | ||||||
Manila Cluster 3 | Manila | 2 | 2 | 90 | – | No |
Manila Cluster 4 | Manila | 2 | 2 | 0 | – | Yes |
Manila Cluster 5 | Manila | 2 | 2 | 192 | – | No |
Manila Cluster 6 | Manila | 2 | 2 | 229 | – | No |
Beijing Cluster 3 | Beijing | 2 | 2 | 3 | – | Yes |
Mixed Cluster 2 | U/Beijing | 2 | 2 | 1153 | – | No |
U Cluster 1 | U | 4 | 4 | 131 | 1–117 | Partial |
Mixed Cluster 1 | Beijing/Manila | 3 | 3 | 1762 | 1–1762 | Partial |
Manila Cluster 7 | Manila | 2 | 2 | 142 | – | No |
Beijing Cluster 4 | Beijing | 2 | 2 | 0 | – | Yes |