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Table 4 The cumulative HGDI with successive addition of each MIRU-VNTR locus

From: Role of MIRU-VNTR and spoligotyping in assessing the genetic diversity of Mycobacterium tuberculosis in Henan Province, China

  VNTR locus No. of pattern No. of cluster No. of cluster isolates No. of isolates in each cluster cluster rate (%) HGDI (cumulative)
1 Qub11b       
2 mtub21 56 38 650 2–165 0.916 0.890
3 miru26 158 69 579 2–122 0.763 0.940
4 qub26 258 78 487 2–80 0.612 0.970
5 mtub-04 318 80 430 2–59 0.524 0.982
6 miru-10 356 84 396 2–49 0.467 0.988
7 ETRF 389 77 356 2–45 0.418 0.990
8 ETRE 420 72 320 2–42 0.371 0.992
9 miru-39 444 76 300 2–35 0.335 0.994
10 ETRA 466 72 274 2–28 0.302 0.996
11 miru-40 492 69 245 2–23 0.263 0.997
12 qub4156 507 63 224 2–21 0.241 0.997
13 mtub-38 512 62 218 2–21 0.234 0.997
14 mtub-39 524 55 199 2–21 0.216 0.997
15 mtub-30 528 53 193 2–20 0.210 0.997
16 ETRB 531 51 188 2–19 0.205 0.998
17 miru-27 536 50 182 2–18 0.198 0.998
18 miru-16 542 51 177 2–16 0.189 0.998
19 ETRD 548 46 166 2–15 0.180 0.998
20 ETRC 555 43 156 2–15 0.169 0.998
21 miru-23 562 42 146 2–15 0.156 0.998
22 mtub29 565 39 142 2–15 0.154 0.998
23 vntr49 565 39 142 2–15 0.154 0.998
24 miru-20 566 39 141 2–15 0.153 0.998
25 miru-2 566 39 141 2–15 0.153 0.998
26 miru-24 567 38 139 2–15 0.151 0.998