Table 3 Number of different patterns and unique strains, clustering percentage, clustering rate and HGDI for the different typing methods in this study
Genotyping method | Number of pattern | Number of cluster | Number of clustered isolates | Number of isolates with unique profile | cluster rate (%) | HGDI |
|---|---|---|---|---|---|---|
spoligotyping | 35 | 10 | 643 | 25 | 0.948 | 0.325 |
12-loci miru-vntr | 263 | 51 | 456 | 212 | 0.606 | 0.925 |
12loci + sp | 292 | 53 | 429 | 239 | 0.563 | 0.941 |
15-loci miru-vntr | 501 | 56 | 223 | 445 | 0.250 | 0.996 |
15loci + sp | 516 | 54 | 206 | 462 | 0.228 | 0.997 |
24-loci miru-vntr | 550 | 42 | 160 | 508 | 0.177 | 0.998 |
24loci + sp | 561 | 40 | 147 | 521 | 0.160 | 0.998 |
26-loci miru-vntr | 567 | 38 | 139 | 529 | 0.151 | 0.998 |
26loci + sp | 576 | 37 | 129 | 539 | 0.138 | 0.999 |