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Table 1 Genome counts before and after dRep

From: BMScan: using whole genome similarity to rapidly and accurately identify bacterial meningitis causing species

Species

Pre-dRep

Post-dRep

% Change

Neisseria gonorrhoeae

400

31

92.25%

Haemophilus influenzae

948

117

87.66%

Listeria monocytogenes

58

21

63.79%

Escherichia coli

151

60

60.26%

Neisseria meningitidis

859

352

59.02%

Neisseria polysaccharea

6

3

50.00%

Haemophilus parainfluenzae

35

18

48.57%

Haemophilus haemolyticus

66

37

43.94%

Neisseria elongata

11

7

36.36%

Neisseria lactamica

47

31

34.04%

Streptococcus pneumoniae

33

22

33.33%

Neisseria cinerea

6

4

33.33%

Haemophilus parahaemolyticus

5

4

20.00%

Neisseria bergeri

5

4

20.00%

Neisseria subflava

39

34

12.82%

Neisseria mucosa

8

7

12.50%

Neisseria weaveri

7

7

0.00%

Total

2684

759

71.65%