Skip to main content

Table 1 List of the reference and clinical strains examined by CanTub-simplex PCR

From: Validation of a simplex PCR assay enabling reliable identification of clinically relevant Candida species

  DNA serial ID. Strain designation number Organism Tm °C
Yeasts Reference ATCC 10231 Candida albicans 78.77 ± 0.06
1 DMC 14134 Candida albicans 78.60 ± 0.08
2 DMC 3666 Candida albicans 78.70 ± 0.11
3 DMC 40678 Candida albicans 78.43 ± 0.16
4 SZMC 22801 Candida albicans 78.57 ± 0.12
5 SZMC 22800 Candida albicans 78.77 ± 0.02
6 SZMC 1523 Candida albicans 78.69 ± 0.05
7 SZMC 1422 Candida albicans 78.67 ± 0.11
Reference ATCC 90030 Candida glabrata 81.55 ± 0.03
8 SZMC 1353 Candida glabrata 81.44 ± 0.14
9 SZMC 1362 Candida glabrata 81.59 ± 0.12
10 SZMC 1370 Candida glabrata 81.30 ± 0.15
11 SZMC 1374 Candida glabrata 81.55 ± 0.14
Reference ATCC 22019 Candida parapsilosis 80.16 ± 0.05
12 DMC 6378 Candida parapsilosis 80.18 ± 0.10
13 DMC 6403 Candida parapsilosis 80.26 ± 0.15
14 DMC 16879 Candida parapsilosis 80.26 ± 0.02
15 SZMC 23640 Candida parapsilosis 79.91 ± 0.02
16 SZMC 8114 Candida parapsilosis 80.18 ± 0.06
17 SZMC 1593 Candida parapsilosis 80.12 ± 0.04
Reference ATCC 750 Candida tropicalis 78.47 ± 0.11
18 DMC 10776 Candida tropicalis 78.13 ± 0.16
19 DMC 2696 Candida tropicalis 78.36 ± 0.02
20 DMC 3403 Candida tropicalis 78.25 ± 0.14
21 SZMC 1351 Candida tropicalis 78.20 ± 0.10
22 SZMC 1364 Candida tropicalis 78.17 ± 0.07
23 SZMC 1366 Candida tropicalis 78.33 ± 0.06
24 SZMC 1368 Candida tropicalis 78.13 ± 0.11
Reference ATCC 6258 Candida krusei 79.31 ± 0.05
25 DMC 26513 Candida krusei 79.27 ± 0.01
26 DMC 23697 Candida krusei 79.34 ± 0.06
27 DMC 22910 Candida krusei 79.39 ± 0.07
28 SZMC 1352 Candida krusei 79.20 ± 0.03
29 SZMC 1414 Candida krusei 79.32 ± 0.05
30 SZMC 1447 Candida krusei 79.24 ± 0.12
31 SZMC 1450 Candida guilliermondii 81.09 ± 0.10
32 SZMC 0808 Candida guilliermondii 81.01 ± 0.06
33 SZMC 1536 Candida guilliermondii 81.08 ± 0.12
34 SZMC 1357 Candida guilliermondii 80.84 ± 0.11
35 SZMC 1469 Candida dubliniensis 77.91 ± 0.05
36 SZMC 1470 Candida dubliniensis 77.75 ± 0.01
37 SZMC 1471 Candida dubliniensis 77.62 ± 0.03
38 SZMC 1472 Candida dubliniensis 77.62 ± 0.08
Moulds Reference FGSC A1156 Aspergillus terreus
39 SZMC 22546 Aspergillus terreus
40 SZMC 22547 Aspergillus terreus
41 SZMC 22548 Aspergillus terreus
42 SZMC 22549 Aspergillus terreus
Reference CBS 101355/AF 293 Aspergillus fumigatus
43 SZMC 2504 Aspergillus fumigatus
44 SZMC 2486 Aspergillus fumigatus
45 SZMC 22550 Aspergillus fumigatus
46 SZMC 22551 Aspergillus fumigatus
47 SZMC 22552 Aspergillus fumigatus
48 SZMC 22553 Aspergillus fumigatus
49 SZMC 22554 Aspergillus fumigatus
Reference CBS 117885 Aspergillus lentulus
50 SZMC 3123 Aspergillus lentulus
51 SZMC 20911 Aspergillus lentulus
Reference NRRL 11611 Aspergillus flavus 86.36
52 SZMC 22583 Aspergillus flavus
53 SZMC 22582 Aspergillus flavus
54 SZMC 22581 Aspergillus flavus 86.61
55 SZMC 22580 Aspergillus flavus 86.34
56 SZMC 22578 Aspergillus flavus 86.39
57 SZMC 22577 Aspergillus flavus
58 SZMC 22575 Aspergillus flavus 86.38
Reference CBS 113.46 Aspergillus niger 86.57
59 SZMC 3119 Aspergillus niger 86.75
60 SZMC 3108 Aspergillus niger
Reference CBS 134.48 Aspergillus tubingensis
61 SZMC 3127 Aspergillus tubingensis
62 SZMC 2040 Aspergillus udagawae
63 SZMC 2041 Aspergillus udagawae
64 SZMC 21694 Aspergillus viridinutans
65 SZMC 13F Fusarium sacchari
66 SZMC 90/11 Fusarium napiforme
67 SZMC 173/11 Fusarium delphinoides
68 SZMC 394/11 Fusarium oxisporum
69 SZMC FSU9682 Lichtemia corymbifera
70 SZMC RH59 Rhizopus oryzae 43.13, 77.38
71 SZMC Sce Scedosporium aurantiacum 37.54, 75.73
Gram-positive bacteria Reference ATCC 25923 Staphylococcus aureus
72 SZMC 14529 Staphylococcus aureus
73 SZMC 14530 Staphylococcus aureus
74 SZMC 14532 Staphylococcus aureus
Reference ATCC 29213 Staphylococcus aureus
Reference ATCC 43300 Staphylococcus aureus
75 SZMC 14531 Staphylococcus epidermidis
Reference ATCC 29212 Enterococcus faecalis
Reference ATCC 8043 Enterococcus hirae
76 SZMC 14538 Enterococcus faecalis
Gram-negative bacteria Reference ATCC 13048 Enterobacter aerogenes
77 SZMC 6222E Enterobacter gergoviae
78 SZMC 6223 Enterobacter gergoviae
79 SZMC 6224 Enterobacter gergoviae
80 SZMC 21890 Enterobacter cloacea
81 SZMC 21892 Enterobacter cloacea
  1. Clinical isolates are from the Szeged Microbiology Collection (SZMC) and from the Debrecen Microbiology Collection (DMC). Reference strains are from American Stock Centre (ATCC), Centraalbureau voor Schimmelcultures, Fungal and Yeast Cultures (CBS), Northern Regional Research Laboratories (NRRL), Fungal Genetics Stock Centre (FGSC)