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Table 4 Results of hot spots analyses for overall KS detection rates and by PCG

From: Unlocking pandemic potential: prevalence and spatial patterns of key substitutions in avian influenza H5N1 in Egyptian isolates

Governorate

Overall KS

PCG1

PCG2

PCG3

PCG4

PCG5

Alexandria

10000a

9927

9187a

17

35

2055

Aswan

0

115

0

0

132

0

Asyut

0

1

0

0

7891a

0

Beheira

10000a

9909

9778a

1483

2025

5304

Beni Suef

0

4533a

1

3

2918

0

Cairo

4

0

10

0

1

0

Dakahlia

2

677a

103

51

658

9

Damietta

0

9

1

26

24

0

Faiyum

2

5405a

0

632

8490a

3

Gharbia

6955

4843

3649

422

1971

3092

Giza

143

217

133

52

477

0

Ismailia

0

0

0

0

1

1

Kafr El Sheikh

6649

5308

3333

920

1700

2143

Luxor

0

83

0

0

471

0

Matruh

326

184

62

0

0

49

Minya

0

124

0

0

1214

0

Monufia

2460

942

1484

557

1738a

310

New Valley

0

6

0

0

200

0

North Sinai

–

–

–

–

–

–

Port Said

0

0

0

22

0

5

Qalyubia

0

0

2

0

0

0

Qena

0

111

0

0

357

0

Red Sea

–

–

–

–

–

–

Sharqia

0

0

0

16

7

0

Sohag

0

1467

0

0

1692

0

South Sinai

–

–

–

–

–

–

Suez

0

1

0

0

3

0

  1. The number of iterations (out of 10,000) in which statistically significant hot spots were detected using dasymetric adjustment is shown for each governorate, while an aindicates hot spots detected in a single run using governorate centroids