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Table 4 Clustering of agr locus mutations among clones and agr genotypes

From: Sub-inhibitory concentrations of oxacillin modify the expression of agr locus in Staphylococcus aureus clinical strains belonging to different clonal complexes

   

agrB

agrD

agrC

agrA

 

Strain

CC a

agr group

SNP b (N°)

Non-synonymous predicted result

SNP (N°)

Non-synonymous predicted result

SNP (N°)

Non-synonymous predicted result

SNP (N°)

Non-synonymous predicted result

Reference

SA_123

CC45

1

35

t329c (110 Ile > Thr);

g340t (114 Val > Phe);

t346g (116 Ser > Ala); t349a (117 Leu > Ile);

gta355ttg (119 Val > Leu);

tca361att (121 Ser > Ile);

gt364aa (122 Val > Lys);

c452t (151 Thr > Ile);

c454t (152 Leu > Phe)

5

26

t125g (42 Val > Gly);

a752t (251 Tyr > Phe);

g1249a (417 Glu > Lys)

19

NCTC8325

SA_520

CC45

1

30

t329c (110 Ile > Thr);

g340t (114 Val > Phe);

t346g (116 Ser > Ala); t349a (117 Leu > Ile);

gta355ttg (119 Val > Leu);

tca361att (121 Ser > Ile);

gt364aa (122 Val > Lys);

c452t (151 Thr > Ile);

c454t (152 Leu > Phe)

5

25

t125g (42 Val > Gly);

a752t (251 Tyr > Phe);

19

NCTC8325

SA_170015

CC45

1

30

t329c (110 Ile > Thr);

g340t (114 Val > Phe);

t346g (116 Ser > Ala); t349a (117 Leu > Ile);

gta355ttg (119 Val > Leu);

tca361att (121 Ser > Ile);

gt364aa (122 Val > Lys);

c452t (151 Thr > Ile);

c454t (152 Leu > Phe)

5

26

t125g (42 Val > Gly);

a752t (251 Tyr > Phe);

t307c (103; I > T)

19

NCTC8325

SA_180015

CC8

ST8

1

 

a409 (138Lys/del -1 bp)

2

NCTC8325

SA_190006

CC8

ST72

1

24

t125g (42 Val > Gly);

a185c (262 Asp>Ala);

c773t (258 Phe > Ile)

2

NCTC8325

SA_70002

CC8

ST72

1

24

t125g (42 Val > Gly);

a185c (262 Asp>Ala);

c773t (258 Phe > Ile)

2

NCTC8325

SA_103

CC5

2

1

c287t (96; Ser > Leu)

N315

SA_80004

CC5

2

1

t313 (138 Phe/del -1 bp)

N315

SA_170006

CC5

ST_125

2

1

t361c (121; I > T)

N315

SA_180009

CC5

ST_125

2

N315

SA_10009

CC15

2

1

11

5

a407g (136 Lys > Arg)

N315

SA_10014

CC15

2

1

11

5

a407g (136 Lys > Arg)

N315

SA_80001

CC30

3

13

a145c (49 Ile/Leu);

a343t (115 Ile/Leu)

3

7

g163a (55 Gly > Arg)

12

MW2

SA_107

CC30

3

13

a145c (49 Ile/Leu);

a343t (115 Ile/Leu)

3

7

g163a (55 Gly > Arg)

12

MW2

  1. a Clonal Complex
  2. b Total number of single nucleotide polymorphism including synonymous and non-synonymous mutations