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Table 3 Description of clusters containing greater than 2% of isolates in this study and their worldwide distribution in the SITVIT2 database

From: Spoligotyping based genetic diversity of Mycobacterium tuberculosis in Ethiopia: a systematic review

SIT (Clade)

Octal number

N. strains (%) in this study

N. in the data base

Distribution in regions with ≥3% of a given SITsa

Distribution in countries with ≥3% of a given SITsb

149 (T3_ETH)

777,000,377,760,771

420 (16.2)

241

EURO-N 33.2, AFRI-E 32.4, EURO-W 12.4, ASIA-W 10.8, AMER-N 8.7

ETH 32.4, DNK 23.6, SAU 10.8, USA 8.7, NLD 7.1, GBR 5.8, FRA 3.7

53 (T1)

777,777,777,760,771

343 (13.2)

3812

AMER-N 21.7, EURO-W 16.1, AMER-S 9.8, EURO-S 9.2, ASIA-W 8.3, AFRI-S 6.3, EURO-N 5.5, AFRI-E 3.9

USA 21.3, ZAF 6.1, ITA 5.9, AUT 5.6, BRA 5.1, TUR 4.3, FRA 3.9, SAU 3.4

25 (CAS_DELHI)

703,777,740,003,171

266 (10.2)

254

ASIA-W 34.3, ASIA-S 11.8, EURO-N 6.3, AFRI-N 9.8, EURO-W 9.1, AMER-N 19.3

SAU 33.8, USA 19.3, IND 6.3, SDN 5.5, NLD 5.5, GBR 3.9, LIB 3.5

37 (T3)

777,737,777,760,771

162 (6.2)

243

EURO-W 18.9, AMER-N 17.3, ASIA-W 13.6, EURO-N 12.8,EURO-E 7, ASIA-S 6.2, EURO-S 4.5, AMER-S 4.1,AFRI-E 3.7, CARI 3.7

USA 15.2, SAU 9.8, DNK 7.0, NLD 5.7, AUT 4.9, CZE 4.9, IND 4.5, BGR 3.9, ITA 3.7, FRA 3.3, TUR 3.3

21 (CAS1_KILI)

703,377,400,001,771

102 (4.0)

243

AFRI-E 61.3, AMER-N 9.1, EURO-W 8.6, EURO-N 7, AFRI-S 5.3, ASIA-W 4.9

TZA 25.5, MDG 15.2, USA 9.0, ZMB 9.0, KEN 7.0, NLD 5.3, ZAF 5.3, SAU 4.9, GBR 4.1

54(MANU2)

777,777,777,763,771

87 (3.4)

114

ASIA-S 21.1, AMER-N 17.5, AFRI-S 14, ASIA-W 12.3, ASIA-N 8.8, AMER-S 3.5, EURO-N 3.5, EURO-W 3.5

IND 19.3, USA 17.5, ZAF 14.0, SAU 9.6, RUS 8.8

26(CAS1_DELHI)

703,777,740,003,771

76 (3.0)

896

ASIA-S 48.4, AMER-N 23.7, EURO-N 8.6, ASIA-W 7.9, EURO-N 3

USA 23.7, IND 23.4, PAK 16.1, BGD 8.0, SAU 7.8, NLD 4.8

52 (T2)

777,777,777,760,731

69 (2.7)

526

EURO-W 26, AMER-N 19.8, EURO-E 7.6, EURO-N 6.5, AFRI-M 6.3, ASIA-W 5.7, EURO-S 5.5, AFRI-S 3.8, AFRI-S 3.8, AFRI-E 3.2

USA 19.0, BLG 8.4, FRA 7.6, NLD 5.1, AUS 4.4, CZE 4.7, ITA 4.7, CAM 4.5, ZAF 3.8

910 (ETH)

700,000,007,177,771

65 (2.5)

5

AMER-N 60, AFRI-E 40

USA 60.0, ETH 40.0

289(CAS1_DELHI)

703,777,740,003,571

59 (2.3)

9

ASIA-S 44.4, EURO-W 22.2, ASIA-W 11.1, AUST 11.1, AMER-N 11.1

NZD 22.2, PAK 22.2, AUS 11.1, BGD 11.1, IND 11.1, SAU 11.1, USA 11.1

  1. aWorldwide distribution of SITs with more than 3% in the SITVIT2 until April 2, 2017, were included. Regions and sub-regions are defined according to United Nations (http://unstats.un.org/unsd/methods/m49/m49regin.htm); regions: AFRI (Africa), AMER(Americas), ASIA(Asia), EURO(Europe), and OCE (Oceania), subdivided in: E (Eastern),M(Middle), C (Central), N (Northern), S (Southern), SE (South-Eastern), and W(Western). Furthermore, CARIB (Caribbean) belongs to Americas, while Oceania is subdivided in 4subregions, AUST (Australasia), MEL (Melanesia), MIC (Micronesia), and POLY (Polynesia).bThe 3-letter country codes are according to http://en.wikipedia.org/wiki/ISO 3166–1 alpha-3; countrywide distribution is only shown for SITs with ≥3% of given SITs as compared to their totalnumberintheSITVIT2 database
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BMC Infectious Diseases

ISSN: 1471-2334

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