Table 2 Distribution of lineages/sublineages of the shared cluster containing 3 or more isolates from Ethiopia (n = 2584) based on spoligotyping data
From: Spoligotyping based genetic diversity of Mycobacterium tuberculosis in Ethiopia: a systematic review
Lineage | Clade/Sublineagea | Total strains | Percentage |
|---|---|---|---|
Lineage 1 (Indo-Oceanic) | EAI | 22 | 0.9 |
EAI1-SOM | 5 | 0.2 | |
EAI5 or EAI3 | 4 | 0.15 | |
EAI6-BGD1 | 4 | 0.15 | |
F33 | 9 | 0.35 | |
MANU | 156 | 6.0 | |
Manu_ancestor | 41 | 1.6 | |
MANU2 | 115 | 4.5 | |
Lineage 2 (East Asian) | Beijing | 5 | 0.2 |
Lineage 3 (East African-Indian) | CAS | 598 | 23.1 |
CAS | 21 | 0.8 | |
CAS_DELHI | 472 | 18.3 | |
CAS1_KILI | 105 | 4.0 | |
Lineage 4 (Euro-American) | Haarlem | 281 | 10.1 |
H1 | 24 | 0.9 | |
H3 | 188 | 7.3 | |
H4 | 58 | 2.2 | |
H4/Ural-1 | 11 | 0.4 | |
LAM | 101 | 3.9 | |
LAM1 | 4 | 0.15 | |
LAM10 | 4 | 0.15 | |
LAM3 and S/Convergent | 24 | 0.9 | |
LAM5 | 6 | 0.2 | |
LAM7_TUR | 44 | 1.7 | |
LAM9 | 19 | 0.7 | |
S | 3 | 0.12 | |
T | 1247 | 48.3 | |
T | 10 | 0.4 | |
T1 | 502 | 19.4 | |
T1 (Tuscany variant) | 3 | 0.12 | |
T1/T3 | 5 | 0.2 | |
T2 | 85 | 3.3 | |
T2-T3 | 5 | 0.2 | |
T3 | 191 | 7.4 | |
T3-ETH | 434 | 16.8 | |
T4 | 12 | 0.5 | |
X | 45 | 1.8 | |
X1 | 40 | 1.6 | |
X2 | 5 | 0.2 | |
Lineage 7 (Ethiopian) | Ethiopian | 107 | 4.1 |
Unknown | Unknown | 19 | 0.7 |
U | 8 | 0.31 | |
U (likely H) | 8 | 0.31 | |
U (likely T3) | 3 | 0.12 |