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Table 1 The Distribution of Spoligotype according to districts in Limpopo Province, South Africa

From: Genetic diversity and distribution of Mycobacterium tuberculosis genotypes in Limpopo, South Africa

Spoligotype family Total isolates
N = 215 (%)
DISTRICTS
Capricorn
N = 101 (%)
Mopani
N = 16 (%)
Sekhukhune
N = 38 (%)
Vhembe
N = 30 (%)
Waterberg
N = 30 (%)
Beijing 32 (14.9) 10 (9.9) 3(18.8) 9(23.7) 7(23.3) 3(10.0)
CAS1_DELHI 4 (1.9) 1 (1.0) 0(0.0) 0(0.0) 1(3.3) 2 (6.7)
S 21(9.8) 13(6.0) 1(0.5) 3(1.4) 0(0.0) 4(1.8)
X1 7(3.2) 6(5.9) 0(0.0) 1(0.5) 0(0.0) 0(0.0)
T1 33 (15.0) 15(7.0) 1(0.47) 7(3.2) 5(2.3) 5(2.3)
LAM3-LAM6 1(0.5) 0(0.0) 1(6.3) 0(0.0) 0(0.0) 0(0.0)
CAS1_KILI 3(1.4) 1(1.0) 1(6.3) 0(0.0) 0(0.0) 1(3.3)
LAM3 21(9.8) 16(7.4) 0(0.0) 2(0.9) 2(0.9) 1(0.5)
LAM9 10(4.7) 4(1.9) 0(0.0) 2(0.9) 0(0.0) 4(1.8)
T5 1(0.5) 1(1.0) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
H3 31.4() 2(0.9) 0(0.0) 1(0.5) 0(0.0) 0(0.0)
T2 2(0.9) 0(0.0) 0(0.0) 1(2.6) 1(3.3) 0(0.0)
MANU2 3(1.4) 2(2.0) 0(0.0) 0(0.0) 1(3.3) 0(0.0)
U 1(0.5) 0(0.0) 1(6.3) 0(0.0) 0(0.0) 0(0.0)
LAM11_ZWE 7(3.3) 3(3.0) 0(0.0) 0(0.0) 4(13.3) 0(0.0)
LAM4 8(3.7) 1(1.0) 2(12.5) 0(0.0) 3(10.0) 2(6.7)
T2-T3 3(1.4) 2(2.0) 1(6.3) 0(0.0) 0(0.0) 0(0.0)
BEIJING-LIKE 2(0.9) 1(1.0) 0(0.0) 1(2.6) 0(0.0) 0(0.0)
EAI1_SOM 4(1.9) 0(0.0) 0(0.0) 2(0.9) 1(0.5) 1(0.5)
X3 4(1.9) 1(1.0) 0(0.0) 2(5.3) 0(0.0) 1(3.3)
CAS 3(1.4) 2(0.9) 0(0.0) 0(0.0) 1(0.5) 0(0.0)
LAM7 2(0.9) 1(0.5) 0(0.0) 0(0.0) 0(0.0) 1(0.5)
T3 1(0.5) 1(0.5) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
LAM8 10(4.7) 3(1.4) 3(1.4) 3(1.4) 1(1.4) 0(0.0)
T4 3(1.4) 3(1.4) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
X2 1(0,5) 1(0.5) 0(0.5) 0(0.5) 0(0.0) 0(0.0)
EAI5 4(1.9) 2(0.9) 0(0.0) 0(0.0) 1(0.5) 1(0.5)
LAM1 1((0.5) 1(0.5) 0(0.0) 0(0.0) 0(0.0) 0(0.0)
FAMILY 33 4(1.9) 1(0.5) 2(0.9) 1(0.5) 0(0.0) 0(0.0)
EAI4 3(1.4) 1(0.5) 2(0.9) 0(0.0) 0(0.0) 0(0.0)
M. microti 4(1.9) 2(0.9) 0(0.0) 0(0.0) 1(0.5) 1(0.5)
  1. Nnumber of isolates, Data is presented as Number (percentage)
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