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Table 2 Summary of the MinION™ sequencing of LAMP amplicons

From: A novel diagnostic method for malaria using loop-mediated isothermal amplification (LAMP) and MinION™ nanopore sequencer

Samples

Mapped reads

Aligned bases

Mean coverage

% Identity

Identification of species with MinION™

Plasmids

P. falciparum

97,290

7,321,826

91,522.825

100

P. falciparum

P. vivax

105,097

8,164,884

99,571.7561

100

P. vivax

P. ovale curtisi

58,084

4,963,139

54,539.98901

100

P. ovale curtisi

P. ovale wallikeri

1054

77,098

963.725

100

P. ovale wallikeri

P. knowlesi

3254

244,871

2986.231707

100

P. knowlesi

P. malariae

627

51,135

581.0795455

100

P. malariae

  1. Clinical evaluation of LAMP assay and MinION™