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Table 1 Primers and their sequences used in this study

From: Genotypes of hepatitis a virus in Turkey: first report and clinical profile of children infected with sub-genotypes IA and IIIA

Primers

Sequences 5’-3’

Product size

Target gene

Target Sequences

References

HAV-ot-VP1–2- 2848 F

GAGCACTGGATGGTTTGGGW

466 bp

VP1/VP2A junction

2848–2867

Designed in this study

HAV-ot-VP1–2- 3314 R

WGCAGTCACWCCTCTCCAAG

3314-3295a

HAV BR5F

TTGTCTGTCACAGAACAATCA

360 bp

VP1/VP2A junction

2952–2973

Reuter et al., 2006

HAV newRT

AGC AGT CAC TCC TCT CCA G

3294–3311b

HA2F

GTTTTGCTCCTCTTTATCATGCTATG

247 bp

VP1-VP3 capsid

2165–2191

Namsai et al., 2011

HA1R

GGAAATGTCTCAGGTACTTTCTTTG

2411–2387c

  1. aM20273; bM14707 and cKP879217 indicates the sequences derived from the GenBank accession numbers