TY - JOUR AU - Villa, L. AU - Guerra, B. AU - Schmoger, S. AU - Fischer, J. AU - Helmuth, R. AU - Zong, Z. PY - 2015 DA - 2015// TI - IncA/C plasmid carrying blaNDM-1, blaCMY-16, and fosA3 in a Salmonella enterica serovar Corvallis strain isolated from a migratory wild bird in Germany JO - Antimicrob Agents Chemother VL - 59 UR - https://doi.org/10.1128/AAC.00944-15 DO - 10.1128/AAC.00944-15 ID - Villa2015 ER - TY - JOUR AU - Yong, D. AU - Toleman, M. A. AU - Giske, C. G. AU - Cho, H. S. AU - Sundman, K. AU - Lee, K. PY - 2009 DA - 2009// TI - Characterization of a new metallo-beta-lactamase gene, bla(NDM-1), and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14 from India JO - Antimicrob Agents Chemother VL - 53 UR - https://doi.org/10.1128/AAC.00774-09 DO - 10.1128/AAC.00774-09 ID - Yong2009 ER - TY - JOUR AU - Ghosh, A. AU - Sarkar, A. AU - Chowdhury, G. AU - Pazhani, G. P. AU - Ramamurthy, T. PY - 2014 DA - 2014// TI - An overview on the New Delhi Mettalo beta-lactamase (NDM)-producers JO - Proc Indian Nation Sci Acad VL - 80 UR - https://doi.org/10.16943/ptinsa/2014/v80i3/55132 DO - 10.16943/ptinsa/2014/v80i3/55132 ID - Ghosh2014 ER - TY - JOUR AU - Cabanes, F. AU - Lemant, J. AU - Picot, S. AU - Simac, C. AU - Cousty, J. AU - Jalin, L. PY - 2012 DA - 2012// TI - Emergence of Klebsiella pneumoniae and Salmonella metallo-beta-lactamase (NDM-1) producers on Reunion Island JO - J Clin Microbiol VL - 50 UR - https://doi.org/10.1128/JCM.01029-12 DO - 10.1128/JCM.01029-12 ID - Cabanes2012 ER - TY - JOUR AU - Kumarasamy, K. K. AU - Toleman, M. A. AU - Walsh, T. R. AU - Bagaria, J. AU - Butt, F. AU - Balakrishnan, R. PY - 2010 DA - 2010// TI - Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study JO - Lancet Infect Dis VL - 10 UR - https://doi.org/10.1016/S1473-3099(10)70143-2 DO - 10.1016/S1473-3099(10)70143-2 ID - Kumarasamy2010 ER - TY - JOUR AU - Rolain, J. M. AU - Parola, P. AU - Cornaglia, G. PY - 2010 DA - 2010// TI - New Delhi metallo-beta-lactamase (NDM-1): towards a new pandemia? JO - Clin Microbiol Infec VL - 16 UR - https://doi.org/10.1111/j.1469-0691.2010.03385.x DO - 10.1111/j.1469-0691.2010.03385.x ID - Rolain2010 ER - TY - JOUR AU - Sarkar, A. AU - Pazhani, G. P. AU - Chowdhury, G. AU - Ghosh, A. AU - Ramamurthy, T. PY - 2015 DA - 2015// TI - Attributes of carbapenemase encoding conjugative plasmid pNDM-SAL from an extensively drug-resistant Salmonella enterica Serovar Senftenberg JO - Front Microbiol VL - 6 UR - https://doi.org/10.3389/fmicb.2015.00969 DO - 10.3389/fmicb.2015.00969 ID - Sarkar2015 ER - TY - JOUR AU - Hu, Y. J. AU - Wang, Y. R. AU - Li, F. Q. PY - 2015 DA - 2015// TI - Study on simultaneous contamination of Salmonella and Campylobacter in retail chicken carcasses in Beijing JO - J Hygiene Research VL - 44 ID - Hu2015 ER - TY - JOUR AU - Yang, B. AU - Cui, Y. AU - Shi, C. AU - Wang, J. Q. AU - Xia, X. D. AU - Xi, M. L. PY - 2014 DA - 2014// TI - Counts, serotypes, and antimicrobial resistance of Salmonella isolates on retail raw poultry in the People's Republic of China JO - J Food Protection VL - 77 UR - https://doi.org/10.4315/0362-028X.JFP-13-439 DO - 10.4315/0362-028X.JFP-13-439 ID - Yang2014 ER - TY - STD TI - Trudel MV, Vincent AT, Attéré SA, Labbe M, Derome N, Culley AI, Charette SJ. 2016. Diversity of antibiotic-resistance genes in Canadian isolates of Aeromonas salmonicida subsp. salmonicida: dominance of pSN254b and discovery of pAsa8. Sci rep 6:35617. ID - ref10 ER - TY - STD TI - Aviv G, Rahav G, Gal-Mor O. 2016. Horizontal transfer of the Salmonella enterica serovar Infantis resistance and virulence plasmid pESI to the gut microbiota of warm-blooded hosts. Mbio 7: pii=e01395-16. ID - ref11 ER - TY - JOUR AU - Huang, J. AU - Wang, M. AU - Ding, H. AU - Ye, M. AU - Hu, F. AU - Guo, Q. PY - 2013 DA - 2013// TI - New Delhi Metallo-beta-lactamase-1 in carbapenem-resistant Salmonella strain, China JO - Emerg Infect Dis VL - 19 UR - https://doi.org/10.3201/eid1912.130051 DO - 10.3201/eid1912.130051 ID - Huang2013 ER - TY - STD TI - Fresnay S, McArthur MA, Magder L, Darton TC, Jones C, Waddington CS, et al. Salmonella Typhi-specific multifunctional CD8+ T cells play a dominant role in protection from typhoid fever in humans. J Translational Medicine. 2016;14:62. ID - ref13 ER - TY - JOUR AU - Goh, Y. S. AU - Clare, S. AU - Micoli, F. AU - Saul, A. AU - Mastroeni, P. AU - Maclennan, C. A. PY - 2015 DA - 2015// TI - Monoclonal antibodies of a diverse isotype induced by an O-antigen glycoconjugate vaccine mediate in vitro and in vivo killing of African invasive nontyphoidal Salmonella JO - Infect Immun VL - 83 UR - https://doi.org/10.1128/IAI.00547-15 DO - 10.1128/IAI.00547-15 ID - Goh2015 ER - TY - STD TI - Wang W, Liu F, Peng ZX, Li FQ, Ma AG. 2016. Complete genome sequence of Salmonella enterica subsp. enterica serovar Indiana C629, a carbapenem-resistant bacterium isolated from chicken carcass in China. Genome Announc 4: pii=e00662-16. ID - ref15 ER - TY - JOUR AU - Chin, C. S. AU - Alexander, D. H. AU - Marks, P. AU - Klammer, A. A. AU - Drake, J. AU - Heiner, C. PY - 2013 DA - 2013// TI - Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data JO - Nat Methods VL - 10 UR - https://doi.org/10.1038/nmeth.2474 DO - 10.1038/nmeth.2474 ID - Chin2013 ER - TY - JOUR AU - Mcarthur, A. G. AU - Waglechner, N. AU - Nizam, F. AU - Yan, A. AU - Azad, M. A. AU - Baylay, A. J. PY - 2013 DA - 2013// TI - The comprehensive antibiotic resistance database JO - Antimicrob Agents Chemother VL - 57 UR - https://doi.org/10.1128/AAC.00419-13 DO - 10.1128/AAC.00419-13 ID - Mcarthur2013 ER - TY - JOUR AU - Chen, L. AU - Zheng, D. AU - Liu, B. AU - Yang, J. AU - Jin, Q. PY - 2016 DA - 2016// TI - VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on JO - Nucleic Acids Res VL - 44 UR - https://doi.org/10.1093/nar/gkv1239 DO - 10.1093/nar/gkv1239 ID - Chen2016 ER - TY - JOUR AU - Pal, C. AU - Bengtsson-Palme, J. AU - Rensing, C. AU - Kristiansson, E. AU - Larsson, D. G. J. PY - 2013 DA - 2013// TI - BacMet: antibacterial biocide and metal resistance genes database JO - Nucleic Acids Res VL - 42 UR - https://doi.org/10.1093/nar/gkt1252 DO - 10.1093/nar/gkt1252 ID - Pal2013 ER - TY - JOUR AU - Both, A. AU - Huang, J. AU - Kaase, M. AU - Hezel, J. AU - Wertheimer, D. AU - Fenner, I. PY - 2016 DA - 2016// TI - First report of Escherichia coli co-producing NDM-1 and OXA-232 JO - Diagn Microbiol Infect Dis VL - 86 UR - https://doi.org/10.1016/j.diagmicrobio.2016.09.005 DO - 10.1016/j.diagmicrobio.2016.09.005 ID - Both2016 ER - TY - JOUR AU - Dolejska, M. AU - Villa, L. AU - Poirel, L. AU - Nordmann, P. AU - Carattoli, A. PY - 2013 DA - 2013// TI - Complete sequencing of an IncHI1 plasmid encoding the carbapenemase NDM-1, the ArmA 16SRNA methylase and a resistance-nodulation-cell division/multidrug efflux pump JO - J Antimicrob Chemother VL - 68 UR - https://doi.org/10.1093/jac/dks357 DO - 10.1093/jac/dks357 ID - Dolejska2013 ER - TY - JOUR AU - Papagiannitsis, C. C. AU - Miriagou, V. AU - Giakkoupi, P. AU - Tzouvelekis, L. S. AU - Vatopoulos, A. C. PY - 2013 DA - 2013// TI - Characterization of pKP1780, a novel IncR plasmid from the emerging Klebsiella pneumoniae ST147, encoding the VIM-1 metallo-beta-lactamase JO - J Antimicrob Chemother VL - 68 UR - https://doi.org/10.1093/jac/dkt196 DO - 10.1093/jac/dkt196 ID - Papagiannitsis2013 ER - TY - JOUR AU - Bae, I. K. AU - Lee, Y. N. AU - Lee, W. G. AU - Lee, S. H. AU - Jeong, S. H. PY - 2007 DA - 2007// TI - Novel complex class 1 integron bearing an ISCR1 element in an Escherichia coli isolate carrying the blaCTX-M-14 gene JO - Antimicrob Agents Chemother VL - 51 UR - https://doi.org/10.1128/AAC.00279-07 DO - 10.1128/AAC.00279-07 ID - Bae2007 ER - TY - JOUR AU - Kiiru, J. AU - Butaye, P. AU - Goddeeris, B. M. AU - Kariuki, S. PY - 2013 DA - 2013// TI - Analysis for prevalence and physical linkages amongst integrons, ISEcp1, ISCR1, Tn21 and Tn7 encountered in Escherichia coli strains from hospitalized and non-hospitalized patients in Kenya during a 19-year period (1992-2011) JO - BMC Microbiol VL - 13 UR - https://doi.org/10.1186/1471-2180-13-109 DO - 10.1186/1471-2180-13-109 ID - Kiiru2013 ER - TY - JOUR AU - Feng, J. AU - Qiu, Y. AU - Yin, Z. AU - Chen, W. AU - Yang, H. AU - Yang, W. PY - 2015 DA - 2015// TI - Coexistence of a novel KPC-2-encoding MDR plasmid and an NDM-1-encoding pNDM-HN380-like plasmid in a clinical isolate of Citrobacter freundii JO - J Antimicrob Chemother VL - 70 UR - https://doi.org/10.1093/jac/dkv232 DO - 10.1093/jac/dkv232 ID - Feng2015 ER - TY - JOUR AU - Lai, J. AU - Wang, Y. AU - Shen, J. AU - Li, R. AU - Han, J. AU - Foley, S. L. PY - 2013 DA - 2013// TI - Unique class 1 integron and multiple resistance genes co-located on IncHI2 plasmid is associated with the emerging multidrug resistance of Salmonella Indiana isolated from chicken in China JO - Foodborne Pathog Dis VL - 10 UR - https://doi.org/10.1089/fpd.2012.1455 DO - 10.1089/fpd.2012.1455 ID - Lai2013 ER - TY - JOUR AU - Noguchi, N. AU - Emura, A. AU - Matsuyama, H. AU - O’hara, K. AU - Sasatsu, M. AU - Kono, M. PY - 1995 DA - 1995// TI - Nucleotide sequence and characterization of erythromycin resistance determinant that encodes macrolide 2′-phosphotransferase I in Escherichia coli JO - Antimicrob Agents Chemother VL - 39 UR - https://doi.org/10.1128/AAC.39.10.2359 DO - 10.1128/AAC.39.10.2359 ID - Noguchi1995 ER - TY - JOUR AU - Noguchi, N. AU - Takada, K. AU - Katayama, J. AU - Emura, A. AU - Sasatsu, M. PY - 2000 DA - 2000// TI - Regulation of transcription of the mph(A) gene for macrolide 2′-phosphotransferase I in Escherichia coli: characterization of the regulatory gene mphR(A) JO - J Bacteriol VL - 182 UR - https://doi.org/10.1128/JB.182.18.5052-5058.2000 DO - 10.1128/JB.182.18.5052-5058.2000 ID - Noguchi2000 ER - TY - JOUR AU - Szczepanowski, R. AU - Braun, S. AU - Riedel, V. AU - Schneiker, S. AU - Krahn, I. AU - Pühler, A. PY - 2005 DA - 2005// TI - The 120 592 bp IncF plasmid pRSB107 isolated from a sewage-treatment plant encodes nine different antibiotic-resistance determinants, two iron-acquisition systems and other putative virulence-associated functions JO - Microbiol VL - 151 UR - https://doi.org/10.1099/mic.0.27773-0 DO - 10.1099/mic.0.27773-0 ID - Szczepanowski2005 ER - TY - JOUR AU - Woodford, N. AU - Carattoli, A. AU - Karisik, E. AU - Underwood, A. AU - Ellington, M. J. AU - Livermore, D. M. PY - 2009 DA - 2009// TI - Complete nucleotide sequences of plasmids pEK204, pEK499, and pEK516, encoding CTX-M enzymes in three major Escherichia coli lineages from the United Kingdom, all belonging to the international O25:H4-ST131 clone JO - Antimicrob Agents Chemother VL - 53 UR - https://doi.org/10.1128/AAC.00688-09 DO - 10.1128/AAC.00688-09 ID - Woodford2009 ER - TY - JOUR AU - Sandegren, L. AU - Linkevicius, M. AU - Lytsy, B. AU - Melhus, A. AU - Andersson, D. I. PY - 2012 DA - 2012// TI - Transfer of an Escherichia coli ST131 multiresistance cassette has created a Klebsiella pneumoniae-specific plasmid associated with a major nosocomial outbreak JO - J Antimicrob Chemother VL - 67 UR - https://doi.org/10.1093/jac/dkr405 DO - 10.1093/jac/dkr405 ID - Sandegren2012 ER - TY - JOUR AU - Partridge, S. R. PY - 2011 DA - 2011// TI - Analysis of antibiotic resistance regions in gram-negative bacteria JO - FEMS Microbiol Rev VL - 35 UR - https://doi.org/10.1111/j.1574-6976.2011.00277.x DO - 10.1111/j.1574-6976.2011.00277.x ID - Partridge2011 ER - TY - JOUR AU - Zhi, C. AU - Lv, L. AU - Yu, L. F. AU - Doi, Y. AU - Liu, J. H. PY - 2016 DA - 2016// TI - Dissemination of the mcr-1 colistin resistance gene JO - Lancet Infect Dis VL - 16 UR - https://doi.org/10.1016/S1473-3099(16)00063-3 DO - 10.1016/S1473-3099(16)00063-3 ID - Zhi2016 ER - TY - JOUR AU - Zhao, J. AU - Chen, Z. AU - Chen, S. AU - Deng, Y. T. AU - Liu, Y. H. AU - Tian, W. PY - 2010 DA - 2010// TI - Prevalence and dissemination of oqxAB in Escherichia coli isolates from animals, farmworkers, and the environment JO - Antimicrob Agents Chemother VL - 54 UR - https://doi.org/10.1128/AAC.00139-10 DO - 10.1128/AAC.00139-10 ID - Zhao2010 ER - TY - JOUR AU - Hou, J. X. AU - Yang, X. Y. AU - Zeng, Z. L. AU - Lv, L. AU - Yang, T. AU - Lin, D. PY - 2013 DA - 2013// TI - Detection of the plasmid-encoded fosfomycin resistance gene fosA3 in Escherichia coli of food-animal origin JO - J Antimicrob Chemother VL - 68 UR - https://doi.org/10.1093/jac/dks465 DO - 10.1093/jac/dks465 ID - Hou2013 ER - TY - JOUR AU - Liu, C. AU - Zheng, H. AU - Yang, M. AU - Xu, Z. F. AU - Wang, X. R. AU - Wei, L. Y. PY - 2015 DA - 2015// TI - Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033 JO - BMC Genomics VL - 16 UR - https://doi.org/10.1186/s12864-015-1890-9 DO - 10.1186/s12864-015-1890-9 ID - Liu2015 ER - TY - JOUR AU - Zhou, H. AU - Zhang, T. W. AU - Yu, D. L. AU - Pi, B. R. AU - Yang, Q. AU - Zhou, J. Y. PY - 2011 DA - 2011// TI - Genomic analysis of the multidrug-resistant Acinetobacter baumannii strain MDR-ZJ06 Sidely spread in China JO - Antimicrob Agents Chemother VL - 55 UR - https://doi.org/10.1128/AAC.01134-10 DO - 10.1128/AAC.01134-10 ID - Zhou2011 ER - TY - JOUR AU - Russo, T. A. PY - 2010 DA - 2010// TI - The K1 capsular polysaccharide of Acinetobacter Baumannii strain 307-0294 is a major virulence factor JO - Infect Immun VL - 78 UR - https://doi.org/10.1128/IAI.00366-10 DO - 10.1128/IAI.00366-10 ID - Russo2010 ER - TY - JOUR AU - Liu, P. L. AU - Li, P. AU - Jiang, X. F. AU - Bi, D. X. AU - Xie, Y. Z. AU - Tai, C. PY - 2012 DA - 2012// TI - Complete genome sequence of Klebsiella pneumoniae subsp. pneumoniae HS11286, a multidrug-resistant strain isolated from human sputum JO - J Bacteriol VL - 194 UR - https://doi.org/10.1128/JB.00043-12 DO - 10.1128/JB.00043-12 ID - Liu2012 ER - TY - JOUR AU - Barkay, T. AU - Miller, S. M. AU - Summers, A. O. PY - 2003 DA - 2003// TI - Bacterial mercury resistance from atoms to ecosystems JO - FEMS Microbiol Rev VL - 27 UR - https://doi.org/10.1016/S0168-6445(03)00046-9 DO - 10.1016/S0168-6445(03)00046-9 ID - Barkay2003 ER - TY - JOUR AU - McIntosh, D. AU - Cunningham, M. AU - Ji, B. AU - Zalinger, Z. B. AU - Gilg, I. C. AU - Danner, G. R. PY - 2008 DA - 2008// TI - Transferable, multiple antibiotic and mercury resistance in Atlantic Canadian isolates of Aeromonas salmonicida subsp. salmonicida is associated with carriage of an IncA/C plasmid similar to the Salmonella enterica plasmid pSN254 JO - J Antimicrob Chemother VL - 61 UR - https://doi.org/10.1093/jac/dkn123 DO - 10.1093/jac/dkn123 ID - McIntosh2008 ER - TY - JOUR AU - Rowe-Magnus, D. A. AU - Mazel, D. PY - 2002 DA - 2002// TI - The role of integrons in antibiotic resistance gene capture JO - Int J med microbial VL - 292 UR - https://doi.org/10.1078/1438-4221-00197 DO - 10.1078/1438-4221-00197 ID - Rowe-Magnus2002 ER -