Table 9 DENV and CHIKV reference sequences
Virus strain | Location | Genotype | Year isolated | GenBank accession no. |
|---|---|---|---|---|
DENV-1 | ||||
NC14-17042014-4554 | New Caledonia | I-Asian | 2014 | KM212960 |
China/GD-D13001 | Thailand | I-Asian | 2013 | KJ545455 |
DENV-1/8/Thailand/01/2013 | Thailand | I-Asian | 2013 | KF887994 |
Khabar 2759 | Khabarovsk, Far East, Russia | I-Asian | 2012 | KJ417841 |
SL_2012_GS0319 | Sri-Lanka | I-Asian | 2012 | KJ26662 |
MKS-WS81 | Indonesia | I-Asian | 2010 | KC762639 |
D1/Vietnam/1012aTw | Viet Nam | I-Asian | 2010 | JF967953 |
Thailand 2010 | Thailand | I-Asian | 2010 | JN415528 |
D1/IDN/Bali_033/2010 | Indonesia | I-Asian | 2010 | KM216676 |
- | Cambodia | I-Asian | 1998 | AF309641 |
GZ/80 | China | I-Asian | 1980 | AF350498 |
PUO 359 | Thailand | I-Asian | 1980 | AF425630 |
16007 | Thailand | II-Thailand | 1964 | AF180817 |
TH-SMAN | Thailand | II-Thailand | 1954 | D10513 |
P72-1244 | Malaysia | III-sylvatic | 1972 | EF457905 |
D1/Hu/Philippines/NIID13/2016 | Philippines | IV-South Pacific | 2016 | LC128301 |
FI/DB170/2014 | Fiji | IV-South Pacific | 2014 | KM279390 |
Phil2012 | Philippines | IV-South Pacific | 2012 | KR919819 |
Philippines 2010 | Philippines | IV-South Pacific | 2010 | JN415517 |
WS01/190801-769 | Samoa | IV-South Pacific | 2001 | JQ655095 |
A88 | Indonesia | IV-South Pacific | 1988 | AB074761 |
AUS HCS1 | Australia | IV-South Pacific | 1983 | AF425611 |
PRS 228682 | Philippines | IV-South Pacific | 1974 | AF425627 |
Guangzhou/2014/4 | China | V-African/American | 2015 | KT751343 |
Wenzhou-Human-1 | China | V-African/American | 2014 | KR024708 |
9/D1/Del/2013 | India | V-African/American | 2013 | KU166895 |
AO/DB132/2013 | Angola | V-African/American | 2013 | KM277610 |
DENV-1/NI/BID-V7696/2012 | Nicaragua | V-African/American | 2012 | KF973475 |
ARC-73-12 | Puerto Rico | V-African/American | 2012 | KF444913 |
D1/Mexico/Ixtaczoquitlan/17/2007 | Mexico | V-African/American | 2007 | HM171564 |
ThD1_0673_80 | Thailand | V-African/American | 1980 | AY732474 |
715393 | India | V-African/American | 1971 | JF297579 |
IBH 28328 | Nigeria | V-African/American | 1968 | AF425625 |
DENV-2 | ||||
SG(EHI)D2/18944Y13 | Singapore | Cosmopolitan | 2013 | KR779784 |
D2/IDN/Lombok_087/2012 | Bali, Indonesia | Cosmopolitan | 2012 | KM216718 |
D2/IDN/Bali_103/2012 | Bali, Indonesia | Cosmopolitan | 2012 | KM216731 |
D2/THA/086/2012 | Thailand | Cosmopolitan | 2012 | KM216717 |
D2/TLS/Timor_078/2012 | East Timor | Cosmopolitan | 2012 | KM216712 |
D2/IDN/Bali_108/2012 | Indonesia | Cosmopolitan | 2012 | KM216736 |
12/GZ/12851 | China | Cosmopolitan | 2012 | KF060919 |
D2/IDN/Bali_075/2011 | Bali, Indonesia | Cosmopolitan | 2011 | KM216709 |
D2/IN/RGCB921/2011 | India | Cosmopolitan | 2011 | KF364514 |
10/GZ/11864 | China | Cosmopolitan | 2010 | JN009092 |
Philippines 2010b | Philippines | Cosmopolitan | 2010 | JN568265 |
D2/IDN/Jakarta_060/2010 | Indonesia | Cosmopolitan | 2010 | KM216708 |
SG(EHI)D2/63481Y10 | Singapore | Cosmopolitan | 2010 | JN030340 |
DENV-2/VN/BID-V735/2006 | Viet Nam | Cosmopolitan | 2006 | EU482672 |
D2/SG/05K3330DK1/2005 | Singapore | Cosmopolitan | 2005 | EU081178 |
GWL177 INDI-01 | India | Cosmopolitan | 2001 | DQ448236 |
2784-DF-11/18/2002 | Taiwan | Cosmopolitan | 2002 | DQ645556 |
MD922 | Viet Nam | Asian II | 2003 | GU434156 |
40247 | Brazil | Asian II | 1990 | L10041 |
ThD2_0284_90 | Thailand | Asian II | 1990 | DQ181801 |
PR/DB189/2013 | Puerto Rico | American/Asian | 2013 | KM279409 |
DR59/01 | Dominican Republic | American/Asian | 2001 | AB122022 |
Cuba115/97 | Cuba | American/Asian | 1997 | AY702050 |
IQT-1950 | Perù | American | 1995 | DQ917242 |
D2/TO/UH04/1974 | Tonga | American | 1974 | HM582117 |
Laos 2010 | Laos | Asian I | 2010 | JN568244 |
D2/Myanmar/1007aTw | Myanmar | Asian I | 2010 | JF968026 |
D2/LAO/043/2010 | Laos | Asian I | 2010 | KM216697 |
D2/Laos/1007aTw | Laos | Asian I | 2010 | JF968021 |
DENV-2/KH/BID-V2062/2007 | Cambodia | Asian I | 2007 | GQ868624 |
Myan0207a/Tw | Myanmar | Asian I | 2002 | DQ518651 |
DENV-2/TH/BID-V2311/2001 | Thailand | Asian I | 2001 | FJ744725 |
GD08/98 | China | Asian I | 1998 | FJ196851 |
ThD2_0168_79 | Bangkok, Thailand | Asian I | 1979 | DQ181805 |
DAK Ar 2022 | Burkina Faso | sylvatic | 1980 | DQ917247 |
DAK Ar 2039 | Burkina Faso | sylvatic | 1980 | DQ917246 |
DENV-3 | ||||
D3/IDN/Bali_007/2010 | Indonesia | I | 2010 | KM216737 |
D3/Malaysia/1012bTw | Malaysia | I | 2010 | JF968112 |
H87 | Philippines | I | 1987 | M93130 |
80-2 | China | I | 1980 | AF317645 |
D3-73NIID | Japan | I | 1973 | AB111085 |
LN2632 | Malaysia | II | 1999 | AF147459 |
D89-273 | Thailand | II | 1989 | AY145715 |
PaH881/88 | Thailand | II | 1988 | AF349753 |
ThD3_0046_83 | Thailand | II | 1983 | AY676358 |
ThD3_0040_80 | Thailand | II | 1980 | AY676359 |
ThD3_0033_74 | Thailand | II | 1974 | AY676360 |
D3BR/ST14/04 | Brazil | III | 2004 | DQ118882 |
- | Singapore | III | 2004 | AY662691 |
D3PY/AS12/02 | Paraguay | III | 2002 | DQ118884 |
BR74886/02 | Brazil | III | 2002 | AY679147 |
Cuba_167_2001 | Cuba | III | 2001 | KT726341 |
Cuba580/01 | Cuba | III | 2001 | AY702030 |
D3/H/IMTSSA-SRI/2000/1266 | Sri Lanka | III | 2000 | AY099336 |
00-28-1HuNIID | Cambodia | III | 2000 | AB111081 |
6883/YUCATAN-MX/97 | Yucatan | III | 1997 | DQ341204 |
1339 | Puerto Rico | IV | 1997 | AY146761 |
Human, Tahiti 1965 | Tahiti | IV | 1965 | L11439 |
DENV-4 | ||||
D4/RL196/Myanmar/2013 | Myanmar | I | 2013 | KJ470765 |
D4/Thailand/0702aTw | Thailand | I | 2007 | EU448454 |
D4/Cambodia/0509aTw | Cambodia | I | 2005 | EU448455 |
ThD4_0485_01 | Thailand | I | 2001 | AY618992 |
ThD4_1142_98 | Thailand | I | 1998 | AY618980 |
ThD4_0348_91 | Bangkok, Thailand | I | 1991 | AY618990 |
SPH317947 | Brazil | II | 2011 | JN092553 |
DENV-4/VE/BID-V1156/2007 | Venezuela | II | 2007 | GQ868645 |
DENV-4/CO/BID-V3412/2005 | Colombia | II | 2005 | CQ868585 |
D4MY02-26658 | Malaysia | II | 2002 | FN429922 |
8976/95 | Singapore | II | 1995 | AY762085 |
D4/PR/M35/1985 | Puerto Rico | II | 1985 | GU318316 |
ThD4_0476_97 | Bangkok, Thailand | III | 1997 | AY618988 |
ThD4_0017_97 | Bangkok, Thailand | III | 1997 | AY618989 |
P75-514 | Malaysia | IV | 1975 | AF231723 |
P73-1120 | Malaysia | IV | 1973 | AF231724 |
CHIKV | ||||
10Mdy105 | Myanmar | East Central South African | 2010 | KF590567 |
GD139 | China | East Central South African | 2010 | HQ846358 |
TN06310 | India | East Central South African | 2010 | HM159388 |
CU-Chik_OBF | Thailand | East Central South African | 2009 | GU908223 |
0901aTw | Malaysia | East Central South African | 2009 | FJ807895 |
0812bTw | Malaysia | East Central South African | 2008 | FJ807893 |
CU-Chik10 | Thailand | East Central South African | 2008 | GU301780 |
FD080178 | China | East Central South African | 2008 | GU199352 |
0810aTw | Bangladesh | East Central South African | 2008 | FJ807898 |
SGEHICHT077808 | Singapore | East Central South African | 2008 | FJ445484 |
ITA07-RA1 | Italy | East Central South African | 2007 | EU244823 |
DRDE-07 | India | East Central South African | 2007 | EU372006 |
LR2006_OPY1 | Reunion | East Central South African | 2006 | DQ443544 |
0611aTw | Singapore | East Central South African | 2006 | FJ807896 |
SL11131 | Sri Lanka | East Central South African | 2006 | AB455493 |
06-027 | Reunion | East Central South African | 2005 | AM258993 |
UgAg4155 | Uganda | East Central South African | 1982 | HM045812 |
Vereeniging | South Africa | East Central South African | 1956 | HM045792 |
S27-African prototype | Tanzania | East Central South African | 1953 | AF369024 |
Ross low-psg | Tanzania | East Central South African | 1953 | HM045811 |
TR206/H804187 | Brazil | Asian | 2014 | KP164572 |
0811aTw | Indonesia | Asian | 2008 | FJ807891 |
2008900245-BDG E1 | Indonesia | Asian | 2008 | KC879577 |
MY021IMR/06/BP | Malaysia | Asian | 2006 | EU703762 |
PhH15483 | Philippines | Asian | 1985 | HM045790 |
Gibbs 63-263 | India | Asian | 1963 | HM045813 |
TH35 | Thailand | Asian | 1958 | HM045810 |
HD 180760 | Senegal | West African | 2005 | HM045817 |
37997 | Senegal | West African | 1983 | AY726732 |