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Table 2 Percentage nucleotide identity between WNV isolates available in Genebank and Tana River WNV strains

From: Detection of West Nile virus in wild birds in Tana River and Garissa Counties, Kenya

WNV STRAINS Lineage KX189174_R.b.quelea_2D_2016_Bura_Kenya KX189175_Dove_4A_2016_Bura_Kenya KX189176_Dove_4B_2016_Bura_Kenya
DQ118127_goose-Hungary/03 I 96.9 95.2 96.9
KJ786934_NY2001-6263_Homosapiens I 97.6 95.9 96.9
KT163243_68856-ICDC-4_2015_India I 95.9 94.1 95.2
JX442279_XJ11129_C.pipiens_2011_China I 100.0 97.9 99.3
JX442281_XJ11141_C.pipiens_2011_China I 100.0 97.9 99.3
DQ374650_Ast02-3-717_P.carbo_2006_Russia I 99.7 97.9 99.0
DQ411031_Ast01-187_C.corone_2006_Russia I 99.7 97.9 99.0
DQ411030_Ast01-182_H.Marginatum_2006_Russia I 99.7 97.9 99.0
KJ501417_WNV-1/US/BID-V6684/2006 I 98.3 96.2 97.6
EF631149_CpWw21_CpWw21_Cx.pipiens_2006_USA I 98.3 96.2 97.6
HM538818_4893_2007_USA_linaege 2 I 98.3 96.2 97.6
DQ786573_France407/04_C.magpie_2004_France I 96.2 94.5 95.5
AY712947_Bird1461_2004_Tx_USA I 97.9 96.2 97.2
AY052409_Goose_ISR98-GooKha_1998_Israel I 97.2 95.5 96.6
KC243146_tick_ATH002316_2006_Kenya I 92.8 91.0 92.1
KX189174_R.b.quelea_2D_2016_Bura_Kenya I 100.0 97.9 99.3
KX189175_Dove_4A_2016_Bura_Kenya I 97.9 100.0 97.2
KX189176_Dove_4B_2016_Bura_Kenya I 99.3 97.2 100.0
DQ318019_WNV_ArD76104_2006_Senegal II 75.5 73.8 75.5
HM147822_WNV_1958_SAfrica_lineage2 II 75.2 73.8 75.2
EF429199_human_SA381/00_2000_S.Africa II 76.9 75.2 76.9
GQ903680_Q3574-5_1968_Cyprus II 75.3 73.9 75.3
HM147824_1958_DRCongo II 76.6 74.8 76.6
AY688948_Sarafend_2005_Israel II 76.2 74.8 76.2
AY765264_Rabensburg_C.pipiens_Czech_lineage 3 III 77.2 75.2 77.2
AY277251_LEIV-Krnd88-190_D.marginatus_1998_Russia_Lineage 4 IV 71.7 70.0 71.0
JN638336_Denguevirus1_KD86-035_1986_outgroup   53.0 51.6 52.3
  1. In bold are sequences obtained from this particular study. Other sequences used in generating the identity matrix were obtained from the genebank