Skip to main content

Table 2 Basic assembly data: Summary of the metrics of assembly used in the present study

From: Deep, multi-stage transcriptome of the schistosomiasis vector Biomphalaria glabrata provides platform for understanding molluscan disease-related pathways

Assembler:

Trinity (k mer 25), 500bp min length

Number of contigs

133,084

Max contig length (bp)

28,281

Mean contig length (bp)

2219.48

Median contig length (bp)

1,537

N50 contig length (bp)

3,221

# contigs in N50

27,526

# contigs > 1kb

90,315

# bases, total

295,377,631

# bases in contigs > 1kb

265,182,009

GC Content %

38.04 %