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Table 3 Summary of significance level for all paired microbe co-occurrencesc

From: Respiratory microbes present in the nasopharynx of children hospitalised with suspected pulmonary tuberculosis in Cape Town, South Africa

 

Influenza A

Rhinovirus

Influenza B

Parainfuenza 3

Parainfuenza 2

Parainfuenza 4

Coronavirus 29

Coronavirus 63

Coronavirus 43

Coronavirus HK

RSV A/Ba

Cytomegalovirus

Adenovirus

Enterovirus

Parainfuenza 1

HmPV A/Bb

M. pneumoniae

Bocavirus

S. aureus

C. pneumoniae

S. pneumoniae

H. influenzae B

P. jirovecii

M. cartarrhalis

Influenza C

H. influenzae spp

Rhinovirus

1

                         

Influenza B

1

1

                        

Parainfuenza 3

1

0.27

1

                       

Parainfuenza 2

1

0.14

1

1

                      

Parainfuenza 4

1

0.27

1

1

1

                     

Coronavirus 229

1

1

1

1

1

1

                    

Coronavirus 63

1

1

1

1

1

1

1

                   

Coronavirus 43

1

0.56

0.33

1

1

1

1

1

                  

Coronavirus

0.07

1

1

1

1

1

1

1

1

                 

RSV A/Ba

1

0.66

1

1

1

1

1

1

1

1

                

Cytomegalovirus

0.07

1

1

1

1

1

0.07

1

0.57

0.12

1

               

Adenovirus

0.38

0.90

1

1

1

1

1

1

0.56

0.13

1

0.23

              

Enterovirus

1

0.08

0.54

1

1

0.20

1

1

1

1

1

0.80

0.16

             

Parainfluenza 1

1

1

1

1

1

1

1

0.04

0.25

1

1

1

1

1

            

HmPV A/Bb

0.78

0.57

0.78

0.3

1

1

1

1

0.41

1

1

0.27

0.79

0.01

1

           

M. pneumoniae

0.48

0.29

1

0.01

1

0.17

1

1

0.68

1

0.12

1

0.36

0.31

1

0.51

          

Bocavirus

0.02

0.33

1

1

1

1

1

1

1

0.08

0.24

1

0.42

0.58

1

0.82

1

         

S. aureus

1

0.72

0.83

1

1

0.39

1

1

0.79

1

0.82

0.37

0.97

0.08

1

0.26

0.83

0.25

        

C. pneumoniae

1

0.76

1

1

1

1

1

1

1

1

0.26

0.47

0.46

0.63

0.19

1

0.58

0.29

0.89

       

S. pneumoniae

0.11

0.09

0.62

1

1

0.67

1

1

0.19

0.67

0.98

0.18

0.77

0.63

0.94

0.03

0.76

0.73

0.28

0.99

      

H. influenzae B

1

0.69

1

1

1

0.27

1

1

0.85

1

1

0.63

0.12

0.02

1

0.75

0.04

1

0.36

0.76

0.43

     

P. jirovecii

0.55

0.44

0.55

1

1

1

1

0.21

0.38

0.01

0.55

0.46

0.81

0.72

1

0.68

0.63

0.60

0.00

1

0.70

0.00

    

M. cartarrhalis

0.51

0.07

0.21

0.42

1

0.88

1

0.41

0.03

0.87

0.51

0.38

0.97

0.05

0.95

0.06

0.01

1

0.81

0.94

0.00

0.71

0.72

   

Influenza C

1

0.79

1

1

1

1

1

1

0.30

1

0.12

1

0.75

0.61

0.06

0.91

0.02

0.53

1

0.19

1

0.00

0.63

0.45

  

H. influenzae spp

0.02

0.57

0.32

0.49

1

1

1

1

0.47

0.50

0.91

0.00

0.39

0.92

0.82

0.02

0.69

0.73

0.99

0.52

0.01

0.86

0.71

0.03

1

 

B. pertussis

1

0.54

0.33

1

1

1

1

1

0.51

1

1

1

1

0.12

1

0.93

0.29

1

1

0.41

0.94

0.00

1

0.13

0.00

0.48

  1. aRSV A/B = Respiratory Syncyntial virus A and B, bHmPV A/B = Human Metapneumovirus A and B
  2. cEach pair of microbe pairs were tested for concurrency and the table reports achieved significance levels (interpreted similar to a p-value) irrespective of the TB category. Significant concurrent relationships are highlighted in bold
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BMC Infectious Diseases

ISSN: 1471-2334

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