Skip to main content

Table 3 Summary of significance level for all paired microbe co-occurrencesc

From: Respiratory microbes present in the nasopharynx of children hospitalised with suspected pulmonary tuberculosis in Cape Town, South Africa

  Influenza A Rhinovirus Influenza B Parainfuenza 3 Parainfuenza 2 Parainfuenza 4 Coronavirus 29 Coronavirus 63 Coronavirus 43 Coronavirus HK RSV A/Ba Cytomegalovirus Adenovirus Enterovirus Parainfuenza 1 HmPV A/Bb M. pneumoniae Bocavirus S. aureus C. pneumoniae S. pneumoniae H. influenzae B P. jirovecii M. cartarrhalis Influenza C H. influenzae spp
Rhinovirus 1                          
Influenza B 1 1                         
Parainfuenza 3 1 0.27 1                        
Parainfuenza 2 1 0.14 1 1                       
Parainfuenza 4 1 0.27 1 1 1                      
Coronavirus 229 1 1 1 1 1 1                     
Coronavirus 63 1 1 1 1 1 1 1                    
Coronavirus 43 1 0.56 0.33 1 1 1 1 1                   
Coronavirus 0.07 1 1 1 1 1 1 1 1                  
RSV A/Ba 1 0.66 1 1 1 1 1 1 1 1                 
Cytomegalovirus 0.07 1 1 1 1 1 0.07 1 0.57 0.12 1                
Adenovirus 0.38 0.90 1 1 1 1 1 1 0.56 0.13 1 0.23               
Enterovirus 1 0.08 0.54 1 1 0.20 1 1 1 1 1 0.80 0.16              
Parainfluenza 1 1 1 1 1 1 1 1 0.04 0.25 1 1 1 1 1             
HmPV A/Bb 0.78 0.57 0.78 0.3 1 1 1 1 0.41 1 1 0.27 0.79 0.01 1            
M. pneumoniae 0.48 0.29 1 0.01 1 0.17 1 1 0.68 1 0.12 1 0.36 0.31 1 0.51           
Bocavirus 0.02 0.33 1 1 1 1 1 1 1 0.08 0.24 1 0.42 0.58 1 0.82 1          
S. aureus 1 0.72 0.83 1 1 0.39 1 1 0.79 1 0.82 0.37 0.97 0.08 1 0.26 0.83 0.25         
C. pneumoniae 1 0.76 1 1 1 1 1 1 1 1 0.26 0.47 0.46 0.63 0.19 1 0.58 0.29 0.89        
S. pneumoniae 0.11 0.09 0.62 1 1 0.67 1 1 0.19 0.67 0.98 0.18 0.77 0.63 0.94 0.03 0.76 0.73 0.28 0.99       
H. influenzae B 1 0.69 1 1 1 0.27 1 1 0.85 1 1 0.63 0.12 0.02 1 0.75 0.04 1 0.36 0.76 0.43      
P. jirovecii 0.55 0.44 0.55 1 1 1 1 0.21 0.38 0.01 0.55 0.46 0.81 0.72 1 0.68 0.63 0.60 0.00 1 0.70 0.00     
M. cartarrhalis 0.51 0.07 0.21 0.42 1 0.88 1 0.41 0.03 0.87 0.51 0.38 0.97 0.05 0.95 0.06 0.01 1 0.81 0.94 0.00 0.71 0.72    
Influenza C 1 0.79 1 1 1 1 1 1 0.30 1 0.12 1 0.75 0.61 0.06 0.91 0.02 0.53 1 0.19 1 0.00 0.63 0.45   
H. influenzae spp 0.02 0.57 0.32 0.49 1 1 1 1 0.47 0.50 0.91 0.00 0.39 0.92 0.82 0.02 0.69 0.73 0.99 0.52 0.01 0.86 0.71 0.03 1  
B. pertussis 1 0.54 0.33 1 1 1 1 1 0.51 1 1 1 1 0.12 1 0.93 0.29 1 1 0.41 0.94 0.00 1 0.13 0.00 0.48
  1. aRSV A/B = Respiratory Syncyntial virus A and B, bHmPV A/B = Human Metapneumovirus A and B
  2. cEach pair of microbe pairs were tested for concurrency and the table reports achieved significance levels (interpreted similar to a p-value) irrespective of the TB category. Significant concurrent relationships are highlighted in bold