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Table 2 SNP genotyping results for 323 isolates, by Blastomyces spp. species (ITS2_19)

From: Development and validation of a novel single nucleotide polymorphism (SNP) panel for genetic analysis of Blastomyces spp. and association analysis

Marker

Allele

B. gilchristii

(%)

B. dermatitidis

(%)

ITS2_19 Ca (n = 177)

ITS2_19 Ta (n = 146)

132GAx11_108

A

176

(99)

14

[10]

 

G

1

[1]

132

(90)

alpha1_3glucan_2360b

A

1c

[1]

62

(42)

 

C

176

(99)

84

(58)

alpha1_3glucan_2386b

C

1c

[1]

146

(100)

 

G

176

(99)

0

(0)

APN2_1016b

C

176

(99)

134

(92)

 

T

1c

[1]

12

[8]

ARF_374b

G

176

(99)

1

[1]

 

A

0

(0)

145

(99)

arf6_240

A

176

(99)

4

[3]

 

G

1

[1]

133

(91)

 

C

0

(0)

9

[6]

BAD1_4

A

176

(99)

1d

[1]

 

G

1c

[1]

145

(99)

BAD1_8b

A

1c

[1]

145

(99)

 

T

176

(99)

1d

[1]

BAD1_9b

C

176

(99)

1d

[1]

 

G

1c

[1]

145

(99)

b-glucosidase_1243b

G

177

(100)

96

(66)

 

A

0

(0)

50

(34)

b-glucosidase_966

A

175

(99)

0

(0)

 

G

1c

[1]

145

(99)

 

N/A

1

[1]

1d

[1]

chit_2396b

C

177

(100)

109

(75)

 

A

0

(0)

37

(25)

chs2_203

C

140

(79)

146

(100)

 

G

37e

[21]

0

(0)

chs2_290f

C

177

(100)

146

(100)

 

G

0

(0)

0

(0)

CoAligase_346

G

177

(100)

0

(0)

 

A

0

(0)

146

(100)

drk1_586a

C

176

(99)

1

[1]

 

T

1

[1]

145

(99)

drk1_595a

A

176

(99)

1d

[1]

 

G

1c

[1]

145

(99)

fads_622f

T

177

(100)

146

(100)

 

C

0

(0)

0

(0)

hsp_764b

A

176

(99)

13

[9]

 

C

1c

[1]

133

(91)

pyrF_21

A

177

(100)

140

(96)

 

C

0

(0)

6

[4]

pyrF_99

C

177

(100)

144

(99)

 

G

0

(0)

2

[1]

septin1_1251

A

175

(99)

17

[12]

 

G

2

[1]

129

(88)

trypt-lig_922

C

177

(100)

0

(0)

 

G

0

(0)

146

(100)

TUB1_18

C

177

(100)

144

(99)

 

T

0

(0)

2

[1]

TUB1_277f

C

177

(100)

146

(100)

 

G

0

(0)

0

(0)

tyrosinase_759

T

174

(98)

132

(90)

 

A

0

(0)

8

[5]

 

N/A

3

[2]

6

[4]

urease_1503

A

177

(100)

69

(47)

 

G

0

(0)

77

(53)

  1. aPublished by Brown et al
  2. bSNP results in amino acid change
  3. cIsolate BD9911
  4. dIsolate BD0503
  5. eIncludes 27 Canadian isolates
  6. fExpected SNP based on genbank sequence