Skip to main content

Advertisement

Table 3 Results of C. trachomatis typing using the hr-MLST-6 scheme based on six polymorphic genes in comparison with ompA-typing and sexgroup

From: Does typing of Chlamydia trachomatis using housekeeping multilocus sequence typing reveal different sexual networks among heterosexuals and men who have sex with men?

Sequence type Number of strains ompA CT046 CT058 CT144 CT172 CT682 Cluster ompA genovar (number of strains) Sexgroupa (number of strains)
3 10 6 1 2 6 2 2 VII E (10) Hetero (10)
11 3 1 5 19 7 2 10   D (3) MSM (3)
16 1 6 7 19 14 2 1 VI E (1) Hetero (1)
27 1 9 10 6 10 1 6   G (1) Hetero (1)
30 1 12 10 7 1 3 8   K (1) MSM (1)
32 1 12 10 7 1 4 8   K (1) Hetero (1)
33 6 8 10 8 5 3 6 II G (6) MSM (6)
35 3 2 10 8 1 4 17   D (3) Hetero (3)
52 17 8 20 8 5 3 6 II G (17) MSM (17)
59 1 6 7 19 7 2 1 VI E (1) Hetero (1)
69 1 6 5 19 6 2 2   E (1) Hetero (1)
74 1 30 8 8 1 7 18   B (1) Hetero (1)
90 2 24 5 19 1 1 4 IV F (2) Hetero (1), MSM (1)
101 1 36 38 5 12 7 18 III I (1) Hetero (1)
109 18 1 5 20 5 2 34 V D (18) MSM (18)
110 1 24 1 2 7 2 4 IV F (1) Hetero (1)
137 1 8 10 8 22 4 6   G (1) Hetero (1)
143 1 28 44 13 17 13 28 VIII L2b (1) MSM (1)
153 2 6 35 19 7 2 1 VI E (2) Hetero (2)
165 1 35 12 5 1 9 8   H (1) Hetero (1)
171 2 6 49 19 7 2 1 VI E (2) Hetero (2)
172 1 6 1 2 7 2 2 VII E (1) Hetero (1)
194 3 1 5 6 5 2 34 V D (3) MSM (3)
232 2 20 5 19 1 4 18   J (2) Hetero (2)
240 1 24 5 19 12 1 4 IV F (1) Hetero (1)
265 1 10 10 4 1 3 7   G (1) Hetero (1)
270 1 8 10 5 12 3 8   G (1) Hetero (1)
272 1 36 10 5 12 24 18 III I (1) Hetero (1)
288 1 8 10 8 22 7 57   G (1) Hetero (1)
301 1 8 20 8 5 1 6 II G (1) MSM (1)
303 1 8 20 8 5 3 34 II G (1) MSM (1)
304 1 8 20 8 5 4 6 II G (1) MSM (1)
305 1 6 25 2 6 2 2 VII E (1) Hetero (1)
307 2 53 29 8 5 3 58 I J (2) MSM (2)
318 1 1 45 20 5 2 34 V D (1) MSM (1)
324 1 1 55 20 5 2 34 V D (1) MSM (1)
338 1 6 67 2 7 2 60   E (1) Hetero (1)
341 1 6 70 57 7 2 1   E (1) Hetero (1)
345 2 53 74 8 5 3 6 I J (2) MSM (2)
353 1 8 81 8 5 3 6 II G (1) MSM (1)
395 1 2 83 4 1 3 17   D (1) Hetero (1)
435 1 9 8 6 10 1 6   G (1) Hetero (1)
448 1 6 1 2 11 2 2 VII E (1) Hetero (1)
449 1 6 1 19 1 1 1   E (1) Hetero (1)
450 1 24 1 19 7 2 4 IV F (1) Hetero (1)
453 1 6 1 19 7 21 1 VI E (1) Hetero (1)
459 1 6 5 19 6 21 2   E (1) Hetero (1)
462 1 6 5 19 7 2 56   E (1) Hetero (1)
465 1 6 5 19 7 14 2   E (1) Hetero (1)
466 1 24 5 19 7 21 4 IV F (1) Hetero (1)
482 1 9 10 6 10 1 8   G (1) Hetero (1)
484 1 37 10 7 1 3 5   I (1) Hetero (1)
498 1 6 24 19 14 2 1 VI E (1) Hetero (1)
502 1 6 45 19 6 1 2   E (1) Hetero (1)
504 1 6 47 19 7 2 1 VI E (1) Hetero (1)
509 1 6 71 2 1 2 2 VII E (1) Hetero (1)
510 1 6 71 2 6 2 2 VII E (1) Hetero (1)
513 2 6 71 19 7 2 1 VI E (2) Hetero (2)
516 1 6 5 19 5 2 2   E (1) Hetero (1)
517 2 36 38 5 12 3 18 III I (2) Hetero (2)
100b 3 36 10 5 12 7 18 III I (3) Hetero (3)
100c 1 37 10 5 12 7 18 III I (1) Hetero (1)
108c 9 53 29 8 5 3 6 I J (9) MSM (9)
12d 13 24 5 19 7 1 4 IV F (13) Hetero (12), MSM (1)
135a 1 20 10 5 12 4 18 III J (1) Hetero (1)
135b 2 36 10 5 12 4 18 III I (2) Hetero (2)
13b 1 24 5 19 15 1 4 IV F (1) Hetero (1)
148a 2 24 5 19 7 2 4 IV F (2) Hetero (1), MSM (1)
205b 1 20 10 6 22 4 8   J (1) Hetero (1)
20a 1 2 10 4 1 4 17   D (1) Hetero (1)
220a 1 12 10 4 1 3 8   K (1) Hetero (1)
281a 1 20 10 8 1 4 18   J (1) Hetero (1)
281b 1 63 10 8 1 4 18   J (1) Hetero (1)
56a 9 6 1 19 7 2 1 VI E (9) Hetero (7), MSM (2)
58a 1 22 27 13 17 13 28 VIII L2 (1) MSM (1)
58b 16 28 27 13 17 13 28 VIII L2b (16) MSM (16)
77b 1 31 5 19 7 2 37   D (1) Hetero (1)
91a 1 24 5 19 5 2 4 IV F (1) MSM (1)
97b 1 35 12 5 11 9 8   H (1) Hetero (1)
  1. a Hetero heterosexual, MSM men who have sex with men