TY - STD TI - Smith CM, Le Comber SC, Fry H, Bull M, Leach S, Hayward AC. Spatial methods for infecitous disease outbreak investigations: systematic literature review. Euro Surveill. 2015;20(39):pii=30026. ID - ref1 ER - TY - BOOK PY - 2014 DA - 2014// TI - Understanding and using tuberculosis data PB - World Health Organization CY - Geneva ID - ref2 ER - TY - STD TI - Public Health England. TB Strain Typing and Cluster Investigation Handbook. vol. 3: London; 2014. ID - ref3 ER - TY - BOOK PY - 2010 DA - 2010// TI - Progressing towards TB elimination PB - ECDC CY - Stockholm ID - ref4 ER - TY - JOUR AU - Walker, T. M. AU - Ip, C. L. C. AU - Harrell, R. H. AU - Evans, J. T. AU - Kapatai, G. AU - Dedicoat, M. J. AU - Eyre, D. W. AU - Wilson, D. J. AU - Hawkey, P. M. AU - Crook, D. W. PY - 2013 DA - 2013// TI - Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study JO - Lancet Infect Dis VL - 13 UR - https://doi.org/10.1016/S1473-3099(12)70277-3 DO - 10.1016/S1473-3099(12)70277-3 ID - Walker2013 ER - TY - JOUR AU - Mears, J. AU - Abubakar, I. AU - Crisp, D. AU - Maguire, H. AU - Innes, J. AU - Lilley, M. AU - Lord, J. AU - Cohen, T. AU - Borgdorff, M. AU - Vynnycky, E. PY - 2014 DA - 2014// TI - Prospective evaluation of a complex public health intervention: lessons from an initial and follow-up cross-sectional survey of the tuberculosis strain typing service in England JO - BMC Public Health VL - 14 UR - https://doi.org/10.1186/1471-2458-14-1023 DO - 10.1186/1471-2458-14-1023 ID - Mears2014 ER - TY - STD TI - Public Health England. Tuberculosis in the UK 2014 report. London: 2014. ID - ref7 ER - TY - STD TI - Mears J, Vynnycky E, Lord J, Borgdorff M, Cohen T, Abubakar I, P S. Evaluation of the Tuberculosis Strain Typing Service (TB-STS) in England. Lancet. 2013;382(Supplement 3):S73. ID - ref8 ER - TY - STD TI - World Health Organization: Electronic recording and reporting for tuberculosis care and control. Geneva: 2012. ID - ref9 ER - TY - BOOK PY - 2014 DA - 2014// TI - Reported Tuberculosis in the United States PB - U.S. Department of Health and Human Serices, CDC CY - Atlanta, GA ID - ref10 ER - TY - STD TI - van Walle I. ECDC starts pilot phase for collection of molecular typing data. Euro Surveill. 2013;18(3):pii=20357. ID - ref11 ER - TY - BOOK AU - Pfeiffer, D. U. AU - Robinson, T. AU - Stevenson, M. AU - Stevens, K. B. AU - Rogers, D. AU - Clements, A. C. PY - 2008 DA - 2008// TI - Spatial analysis in epidemiology PB - Oxford University Press CY - Oxford, UK UR - https://doi.org/10.1093/acprof:oso/9780198509882.001.0001 DO - 10.1093/acprof:oso/9780198509882.001.0001 ID - Pfeiffer2008 ER - TY - BOOK PY - 2013 DA - 2013// TI - ArcGIS Desktop PB - Environmental Systems Research Institute CY - Redlands, CA ID - ref13 ER - TY - STD TI - QGIS Geographic Information System. 2.10.1 edn. Open Source Geospatial Foundation Project; 2015. ID - ref14 ER - TY - BOOK AU - Kulldorff, M. PY - 2015 DA - 2015// TI - SaTScanTM v9.4.2: Software for the spatial and space-time scan statistics ID - Kulldorff2015 ER - TY - BOOK PY - 2015 DA - 2015// TI - ECEC Map Maker (EMMa) ID - ref16 ER - TY - BOOK AU - Chang, W. AU - Cheng, J. AU - Allaire, J. J. AU - Xie, Y. AU - McPherson, J. PY - 2015 DA - 2015// TI - shiny: Web Application Framework for R ID - Chang2015 ER - TY - BOOK PY - 2013 DA - 2013// TI - R: A language and environment for statistical computing PB - R Foundation for Statistical Computing CY - Vienna, Austria ID - ref18 ER - TY - BOOK AU - Cheng, J. AU - Xie, Y. PY - 2015 DA - 2015// TI - leaflet: Create Interactive Web Maps with the JavaScript ‘Leaflet’ Library ID - Cheng2015 ER - TY - STD TI - © OpenStreetMap contributors. OpenStreetMap®. 2015. ID - ref20 ER - TY - BOOK AU - Neuwirth, E. PY - 2011 DA - 2011// TI - RColorBrewer: ColorBrewer palettes ID - Neuwirth2011 ER - TY - BOOK AU - Kahle, D. AU - Wickham, H. PY - 2013 DA - 2013// TI - ggmap: A package for spatial visualization with Google Maps and OpenStreetMap ID - Kahle2013 ER - TY - BOOK AU - Wickham, H. PY - 2009 DA - 2009// TI - ggplot2: Elegant graphics for data analysis PB - Springer CY - New York UR - https://doi.org/10.1007/978-0-387-98141-3 DO - 10.1007/978-0-387-98141-3 ID - Wickham2009 ER - TY - BOOK AU - Aragón, T. PY - 2012 DA - 2012// TI - epitools: Epidemiology Tools ID - Aragón2012 ER - TY - BOOK PY - 2015 DA - 2015// TI - SuperZip example ID - ref25 ER - TY - JOUR AU - Story, A. AU - Aldridge, R. W. AU - Abubakar, I. AU - Stagg, H. R. AU - Lipman, M. AU - Watson, J. M. AU - Hayward, A. C. PY - 2012 DA - 2012// TI - Active case finding for pulmonary tuberculosis using mobile digital chest radiography: an observational study JO - Int J Tuberc Lung Dis VL - 16 UR - https://doi.org/10.5588/ijtld.11.0773 DO - 10.5588/ijtld.11.0773 ID - Story2012 ER - TY - STD TI - Le Comber SC, Rossmo DK, Hassan AN, Fuller DO, Beier JC. Geographic profiling as a novel spatial tool for targeting infectious disease control. International journal of health geographics. 2011;10(35). ID - ref27 ER - TY - BOOK PY - 2006 DA - 2006// TI - Understanding the TB cohort review process: instruction guide PB - CDC CY - Atlanta, GA ID - ref28 ER - TY - JOUR AU - Anderson, C. AU - White, J. AU - Abubakar, I. AU - Lipman, M. AU - Tamne, S. AU - Anderson, S. R. AU - deKoningh, J. AU - Dart, S. PY - 2014 DA - 2014// TI - Raising standards in UK TB control: introducing cohort review JO - Thorax VL - 69 UR - https://doi.org/10.1136/thoraxjnl-2013-203751 DO - 10.1136/thoraxjnl-2013-203751 ID - Anderson2014 ER -