From: Diarrhoeagenic Escherichia coli in mother-child Pairs in Ile-Ife, South Western Nigeria
Target gene or probe | Type | Primer Designation | Primers (5’ to 3’) | Amplicon size (base pair) |
---|---|---|---|---|
eae | EPEC/EHEC | eae 1 | CTGAACGGCGATTACGCGAA | 917 |
eae 2 | CCAGACGATACGATCCAG | |||
bfp | EPEC | bfp 1 | AATGGGCTTGCGCTTCCAG | 326 |
bfp 2 | GCCGCTTTATCCAACCTGGTA | |||
CVD432 | EAEC | EAEC1 | CTGGCGAAAGACTGTATCAT | 630 |
EAEC2 | CAATGTATAGAAATCCGCTGTT | |||
LT gene | ETEC | LTf | GGCGACAGATTATACCGTGC | 450 |
LTr | CGGTCTCTATTATACCGTGC | |||
ST gene | ETEC | STf | ATTTTTMTTTCTGTATTRTCTT | 190 |
STr | CACCCGGTACARGCAGGATT | |||
ipaH | EIEC | IpaH1 | GTTCCTTGACCGCCTTTCCGATACCGTC | 600 |
IpaH2 | GCCGGTCAGCCACCCTCTGAGAGTAC | |||
Stx1 | EHEC/STEC | Stx1f | ATAAATCGCCATTCGTTGACTAC | 180 |
Stx2r | AGAACGCCCACTGAGATCATCC | |||
stx2 | EHEC/STEC | Stx2f | GGCACTGTCTGAAACTGCTCC | 255 |
Stx2r | TCGCCAGTTATCTGACATTCTG | |||
IS3 | N/A | IS3 | ACACTTAGCCGCGTGTCC | Variable |
fliC | N/A | F-FLIC1 | ATGGCACAAGTCATTAATACCCAAC | Variable |
R-FLIC2 | CTAACCCTGCAGCAGAGACA |