From: Detection of HPV DNA in paraffin-embedded cervical samples: a comparison of four genotyping methods
 | Cytology | FFPE samples | |||
---|---|---|---|---|---|
HPV, type | Linear Array | Onclarity | Inno-LiPA | Linear Array | SPF-LiPA25 |
Any oncogenicb | 60 (100.0) | 54 (90.0) | 51 (85.0) | 48 (80.0) | 57 (95.0) |
Single probes | Â | Â | Â | Â | Â |
HPV 16 | 32 (53.3) | 26 (43.3) | 25 (41.7) | 24 (40.0) | 29 (48.3) |
HPV 18 | 9 (15.0) | 8 (13.3) | 7 (11.7) | 5 (8.3) | 8 (13.3) |
HPV 31 | 8 (13.3) | 7 (11.7) | 7 (11.7) | 6 (10.0) | 7 (11.7) |
HPV 33 | 2 (3.3) | NA | 2 (3.3) | 2 (3.3) | 2 (3.3) |
HPV 35 | 1 (1.7) | NA | 0 | 0 | 0 |
HPV 39 | 4 (6.7) | NA | 2 (3.3) | 2 (3.3) | 2 (3.3) |
HPV 45 | 8 (13.3) | 5 (8.3) | 2 (3.3) | 3 (5.0) | 5 (8.3) |
HPV 51 | 6 (10.0) | 1 (1.7) | 2 (3.3) | 1 (1.7) | 2 (3.3) |
HPV 52 | NA | 5 (8.3) | 3 (5.0) | NA | 6 (10.0) |
HPV 56 | 4 (6.7) | NA | 1 (1.7) | 1 (1.7) | 1 (1.7) |
HPV 58 | 5 (8.3) | NA | 3 (5.0) | 3 (5.0) | 3 (5.0) |
HPV 59 | 2 (3.3) | NA | 0 | 2 (3.3) | 1 (1.7) |
HPV 66 | 4 (6.7) | NA | 0 | 0 | 1 (1.7) |
HPV 68 | 2 (3.3) | NA | 0 | 1 (1.7) | NA |
Combined probes | Â | Â | Â | Â | Â |
52/33/35/58c | 6 (10.0) | NA | NA | 2 (3.3) | NA |
33/58 | NA | 5 (8.3) | NA | NA | NA |
35/39/68 | NA | 3 (5.0) | NA | NA | NA |
56/59/66 | NA | 4 (6.7) | NA | NA | NA |
68/73 | NA | NA | NA | NA | 2 (3.3) |
Multiple infectionsd | 21(35.0) | 10 (16.6) | 3 (5.0) | 4 (6.7) | 11 (18.3) |