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Table 4 Identification of novel hsp65 sequevar codes and hsp65 SNPs among “M. indicus pranii” and M. intracellulare clinical strains compared to the M. intracellulare type strain

From: Molecular analysis of clinical isolates previously diagnosed as Mycobacterium intracellulare reveals incidental findings of “Mycobacterium indicus pranii” genotypes in human lung infection

hsp65 codea

Species or strain

Nucleotide at the indicated base pair position (hsp65)b

No. of isolates

192

198

249

279

285

459

477

555

633

726

804

921

933

1011

1191

1371

1423

1467

Code 10

M. intracellulare ATCC13950

G

G

C

G

T

C

C

C

G

C

C

C

T

G

G

G

C

C

9

Code 11

M. intracellulare FCC1804

T

13

Code 12

M. intracellulare 96006

T

0

Code 13

M. chimaera MI-JC

T

T

T

C

T

48

Code 14

M. intracellulare 90331

A

T

2

Code N4c

M. intracellulare clinical isolate 64

T

A

T

T

C

T

T

1

Code N5c

M. intracellulare MOTT36Y

A

G

G

C

T

G

C

C

C

1

Code N6c

M. indicus pranii” MTCC9506

G

C

C

3

  1. aClassification according to Turenne et al. [33]
  2. b • indicates the same base pair as in code 10; New base pair position found in this study are indicated by bold font
  3. cNew code types found in this study are designated by code N4, N5, and N6