Genome | CpG hexamere deviation from expected values in %a | |||||||
---|---|---|---|---|---|---|---|---|
Bacteria | Strain | Size (Mb) | G + C% | CpG per kbb | Total CpGc | Stimulatoryd | Inhibitorye | CpG indexf |
H. ducreyi | HP35000 | 1.7 | 38.2 | 41.0 | 112.2 | 124.8 | 110.4 | 6.6 |
C. trachomatis | E/11023 | 1.04 | 41.3 | 33.8 | 79.3 | 90.7 | 79.1 | 3.1 |
C. trachomatis | E/150 | 1.04 | 41.3 | 33.8 | 79.3 | 90.8 | 79.1 | 3.1 |
C. trachomatis | E/SW3 | 1.05 | 41.3 | 33.8 | 79.3 | 90.8 | 79.1 | 3.1 |
C. trachomatis | L2b/UCH-1 | 1.04 | 41.3 | 33.9 | 79.4 | 86.7 | 76.1 | 2.9 |
N. gonorrhoeae | FA 1090 | 2.15 | 52.7 | 92.2 | 132.9 | 83.9 | 143.5 | −73.1 |
N. gonorrhoeae | NCCP11945 | 2.24 | 52.4 | 90.7 | 132.3 | 80.3 | 145.8 | −78.6 |
N. gonorrhoeae | TCDC-NG08107 | 2.19 | 52.5 | 91.7 | 132.8 | 80.5 | 145.8 | −79.5 |
T. pallidum | Dal-1 | 1.14 | 52.8 | 75.1 | 107.8 | 107.5 | 85.7 | 17.7 |
T. pallidum | SS14 | 1.14 | 52.8 | 75.0 | 107.7 | 107.5 | 85.6 | 17.7 |
T. pallidum | Chicago | 1.14 | 52.8 | 75.1 | 107.8 | 107.6 | 85.7 | 17.7 |
T. pallidum | Mexico | 1.14 | 52.8 | 75.1 | 107.8 | 107.5 | 85.7 | 17.7 |
M. genitalium | G37 | 0.58 | 31.7 | 9.7 | 38.8 | 74.9 | 35.0 | 1.5 |
M. genitalium | M2288 | 0.58 | 31.7 | 9.8 | 38.9 | 75.0 | 35.2 | 1.5 |
M. genitalium | M2321 | 0.58 | 31.7 | 9.8 | 39.1 | 75.3 | 35.5 | 1.5 |
M. genitalium | M6282 | 0.58 | 31.7 | 9.8 | 39.1 | 74.4 | 35.5 | 1.5 |
M. genitalium | M6320 | 0.58 | 31.7 | 9.8 | 38.9 | 75.0 | 35.3 | 1.5 |
G. vaginalis | 409-05 | 1.62 | 42.0 | 48.3 | 109.3 | 125.5 | 87.3 | 20.2 |
G. vaginalis | ATCC 14019 | 1.67 | 41.4 | 45.0 | 105.2 | 138.7 | 83.3 | 26.2 |
G. vaginalis | HMP 9231 | 1.73 | 41.2 | 44.4 | 104.7 | 137.3 | 83.1 | 25.2 |
M. hominis | ATCC 23144 | 0.67 | 27.1 | 12.8 | 69.4 | 113.1 | 70.0 | 3.8 |
U. urealyticum | ATCC 33699 | 0.87 | 25.8 | 13.8 | 82.9 | 138.2 | 64.3 | 8.4 |
E. coli | ABU 83972 | 5.13 | 50.6 | 49.2 | 111.7 | 146.6 | 108.2 | 21.1 |
L. crispatus | ST1 | 2.04 | 36.9 | 27.5 | 80.8 | 96.6 | 80.0 | 3.7 |
L. gasseri | ATCC 33323 | 1.89 | 35.3 | 23.4 | 75.4 | 99.0 | 73.0 | 4.6 |