Table 2 Multilocus sequence typing [46] of Malawian CPS locus variants
| Â | Â | Â | Â | MLST house keeping genes | Â | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Strain ID | Serotype | Country sampled | Sequence Type (ST) | aroE | gdh | gki | recP | spi | xpt | ddl | Closest Matching ST* |
JF911504.1 | 6B-III | Netherlands | Novel | 7 | 6 | 1 | 8 | 6 | 1 | 14 | Â |
JF911507.1 | 6B-III | Netherlands | 90 | 5 | 6 | 1 | 2 | 6 | 3 | 4 | Â |
ERS096173 | 6B | Malawi | Novel | 2 | 8 | 1 | 10 | 17 | 1 | 19 | 2863 (33D) (DLV) |
4441 (6C) (DLV) | |||||||||||
5266 (22A) (DLV) | |||||||||||
ERS096172 | 6B | Malawi | Novel | 1 | 43 | 29 | 1 | 77 | 1 | 14 | 8783 (NT) (DLV) |
ERS096166 | 6B | Malawi | Novel | 10 | 9 | 4 | 5 | 15 | 20 | 28 | 6382 (6A) (SLV) |
7744 (6A) (SLV) | |||||||||||
ERS096165 | 6B | Malawi | Novel | 10 | 9 | 4 | 5 | 15 | 4 | 2 | 6382 (6A) (DLV) |
7744 (6A) (DLV) | |||||||||||
ERS096169 | 6B | Malawi | Novel | 54 | 5 | 4 | 5 | 36 | 142 | 269 | 8050 (6A) (SLV) |
ERS096157 | 19A | Malawi | 2062 | 1 | 5 | 53 | 32 | 14 | 20 | 199 | Â |
ERS096159 | 20 | Malawi | Novel | 13 | 5 | 4 | 5 | 6 | 28 | 168 | 5392 (20) (DLV) |
7651 (20) (DLV) | |||||||||||
ERS096158 | 20 | Malawi | 5435 | 2 | 5 | 36 | 12 | 6 | 20 | 269 | Â |