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Table 1 Primers used in the optimized in-house assay

From: HIV-1 transmitted drug resistance-associated mutations and mutation co-variation in HIV-1 treatment-naïve MSM from 2011 to 2013 in Beijing, China

Primer name

Sequence (5,-3,)

Location (based on HXB2)

Purpose

MAW 26

TTGGAAATGTGGAAAGGAAGGAC

2028-2050

RT-PCR

RT21

CTGTATTTCTGCTATTAAGTCTTTTGATGGG

3509-3539

RT-PCR

PRO-1

CAGAGCCAACAGCCCCACCA

2147-2166

Nested PCR

RT20

CTGCCAGTTCTAGCTCTGCTTC

3441-3462

Nested PCR

MAW26-07BC

TGGAAATGTGGAAAAGAAGGAC

2028-2050

RT-PCR

RT21-07BC

CTGTATTTCAGCTATCAAGTCTTTTGATGGG

3509-3539

RT-PCR

PRO1-07BC

CAGAGCCAACAGCCCCACCA

2147-2166

Nested PCR

RT20-07BC

CTGCCAATTCTAATTCTGCTTC

3441-3462

Nested PCR

MAW26-01AE

TGGAAATGTGGRAARGAAGGAC

2028-2050

RT-PCR

RT21-01AE

GTAYTTCTGCTAYTAAGTCTTTTGATGGG

3511-3539

RT-PCR

PRO1-01AE

CAGAGCCAWCAGCCCCACCA

2147-2166

Nested PCR

RT20-01AE

CTGCCAAYTCTAATTCTGCTTC

3441-3462

Nested PCR