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Table 1 Overview of raw sequence data obtained from the cultures C. trachomatis samples

From: Whole-genome enrichment and sequencing of Chlamydia trachomatisdirectly from clinical samples

ID Sample type Genome copies in 1-2 ml DNA extract Total inputC. trachomatisgenome copies Total reads Mapped reads Reads mapping toC. trachomatis Serovar/Genotype (ompA)
CT_10 Culture 2.3x109 362,346,600 3450960 3058284 88.62% B
CT_11 Culture 3.5x108 2,098,188,000 3847486 3455294 89.81% C
CT_12 Culture 8.1x109 683,544,000 5055724 4632017 91.62% G
CT_13 Culture 1.1x109 1,070,106,000 3923244 3512706 89.54% H
CT_14 Culture 1.8x109 8,421,480,000 4814146 4524936 93.99% I
CT_15 Culture 1.4x1010 5,587,859,200 4572350 4242802 92.79% J
CT_16 Culture 1.4x1010 1,563,216,000 7734134 7240982 93.62% L1
CT_17 Culture 2.6x109 1224,048,000 6316494 5681915 89.95% L2
  1. All 8 samples were sequenced in a MiSeq run. The total input refers to the number of C. trachomatis genome copies used as input in the library preparation. The genotyping (ompA) was performed in the clinical laboratory.