Table 1 Bacterial species and subspecies included in the DNA-DNA checkerboard assay
Species Panel 1 | Collection* | Species Panel 2 | Collection* |
|---|---|---|---|
1a. Aggregatibacter actinomycetemcomitans (a) | ATCC 29523 | 1. Actinomyces neuii | GUH 550898 |
1b. Aggregatibacter actinomycetemcomitans (Y4) | ATCC 43718 | 2. Aerococcus christensenii | GUH 070938 |
2. Actinomyces israelii | ATCC 12102 | 3. Anaerococcus vaginalis | GUH 290486 |
3. Actinomyces naeslundii (type I + II) | ATCC 43146 | 4. Atopobium parvulum | GUH 160323 |
4. Actinomyces odontolyticum | ATCC 17929 | 5. Atopobium vaginae | GUH 010535 |
5. Campylobacter gracilis | ATCC 33236 | 6. Bacteroides ureolyticus | GUH 080189 |
6. Campylobacter rectus | ATCC 33238 | 7. Bifidobacterium biavatii | GUH 071026 |
7. Campylobacter showae | ATCC 51146 | 8. Bifidobacterium bifidum | GUH 070962 |
8. Capnocytophaga gingivalis | ATCC 33612 | 9. Bifidobacterium breve | GUH 080484 |
9. Capnocytophaga ochraceae | ATCC 33596 | 10. Bifidobacterium longum | GUH 180689 |
10. Capnocytophaga sputigena | ATCC 33612 | 11. Corynebacterium aurimucosum | GUH 450453 |
11. Eikenella corrodens | ATCC 23834 | 12. Corynebacterium nigricans | GUH 071035 |
12. Eubacterium saburreum | ATCC 33271 | 13. Dialister sp. | GUH071045 |
13a. Fusobacterium nucleatum subsp. Nucleatum | ATCC 25586 | 14a. Enterococcus faecalis | GUH170812 |
13b. Fusobacterium nucleatum subsp. Polymorphum | ATCC 10953 | 14b. Enterococcus faecalis | ATCC 29212 |
13c. Fusobacterium nucleatum subsp.Naviforme | ATCC 49256 | 15. Escherichia coli | GUH 070903 |
14. Fusobacterium periodonticum | ATCC 33693 | 16. Gardnerella vaginalis | GUH 080585 |
15. Lactobacillus acidophilus | ATCC 11975 | 17. Haemophilus influenzae | ATCC 49247 |
16. Leptotrichia buccalis | ATCC 14201 | 18. Helicobacter pylori | ATCC 43504 |
17. Parvimonas micra | ATCC 19696 | 19. Lactobacillus crispatus | GUH 160342 |
18. Neisseria mucosa | ATCC 33270 | 20. Lactobacillus gasseri | GUH 170856 |
19. Prevotella intermedia | ATCC 25611 | 21. Lactobacillus iners | GUH 160334 |
20. Prevotella melaninogenica | ATCC 25845 | 22. Lactobacillus jensenii | GUH 160339 |
21. Prevotella nigrescens | ATCC 33563 | 23. Lactobacillus vaginalis | GUH 0780928 |
22. Porphyromonas gingivalis | ATCC 33277 | 24. Mobiluncus curtisii | GUH 070927 |
23. Propionibacterium acnes (type I+II) | ATCC11827/28 | 25. Mobiluncus mulieris | GUH 070926 |
24. Selenomonas noxia | ATCC 43541 | 26. Peptoniphilus sp. | GUH 550970 |
25. Staphylococcus aureus | ATCC 25923 | 27. Porphyromonas endodontalis | ATCC35406 |
26. Streptococcus anginosus | ATCC 33397 | 28. Peptostreptococcus anaerobius | GUH 160362 |
27. Streptococcus constellatus | ATCC 27823 (M32b) | 29. Prevotella bivia | GUH 450429 |
28. Streptococcus gordonii | ATCC 10558 | 30. Prevotella disiens | GUH 190184 |
29. Streptococcus intermedius | ATCC 27335 | 31. Prevotella mirabilis | GUH 070918 |
30. Streptococcus mitis | ATCC 49456 | 32. Pseudomonas aeruginosa | ATCC 33467 |
31. Streptococcus oralis | ATCC 35037 | 33a. Staphylococcus aureus (yellow) | GUH 070921 |
32. Streptococcus sanguinis | ATCC 10556 | 33b. Staphylococcus aureus (white) | GUH 070922 |
33. Streptococcus mutans | ATCC 25175 | 34. Staphylococcus epidermidis | GUH 130381 |
34. Tannerella forsythia | ATCC 43037 (338) | 35. Staphylococcus haemolyticus | GUH071047 |
35. Treponema denticola | ATCC 35405 | 36. Streptococcus agalactiae | GUH 230282 |
36. Treponema socranskii | D40DR2 | 37. Varibaculum cambriense | GUH 070917 |
37. Veillonella parvula | ATCC 10790 | Â | Â |