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Table 2 PCR primers and conditions for quantitative PCR

From: Gene expression changes linked to antimicrobial resistance, oxidative stress, iron depletion and retained motility are observed when Burkholderia cenocepaciagrows in cystic fibrosis sputum

Gene

Forward and reverse primer (5' – 3')

Product size (bp)

Tm (°C)

Real-time PCR

  

Control gene BCAL1861 (phaC)

AGACGGCTTCAAGGTGGT

ACACGGTGTTGACCGTCA

470

62/66

BCAL0270

GCGCGAACCCGATCGAATTC

GCCCGCATCCACCAGAAGTG

400

66

BCAM2753

GAACCGCAGACGCTGTACTC

AAACGCTCGGTGTTGCGGAC

380

62

BCAL1107

GAATCGACGTATCGGCTCGT

ATGATGTGCTTCGGGTTCTTG

377

66

BCAM1676

GACGACCTGTTCCTGCTGTG

CGGCTCTTCCTGATGACGTG

534

62

Semi-quantitative PCR

  

BCAL1165

TGACGCTCGGCACCGTTGAC

GCGTGGACCTGCTCGATCTC

400

66