Gene | UL27/gB (2715nt) | US4/gG (2100nt) | US7/gI (1119nt) | US8/gE (1638nt) | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Total no. of isolates | 69 | 64 | 49 | 48 | ||||||||
Nucleotide diversity (%) affecting: | ||||||||||||
1 isolate | 1.14 | 2.24 | 1.70 | 1.40 | ||||||||
â‰¥2 isolates | 0.81 | 1.52 | 0.80 | 0.55 | ||||||||
Position | No. of isolates | Substitutions, comments | Position | No. of isolates | Substitutions, comments | Position | No. of isolates | Substitutions, comments | Position | No. of isolates | Substitutions, comments | |
19 | 21 | A â‡’ G | 104 | 58 | G â‡’ A | 39 | 5 | C â‡’ T | 131 | 46 | ins. GGC CGG AGG | |
64-72 or 76-84* | 66 | del. GCC CCG GCG or GCG GCC CCG | 274 | 26 | T â‡’ C | 338 | 2 | A â‡’ G | 341 | 2 | G â‡’ T | |
104 | 2 | G â‡’ A | 329 | 17 | G â‡’ A | 530 | 2 | C â‡’ T | 392 | 11 | T â‡’ G | |
106 | 2 | G â‡’ A | 405 | 8 | C â‡’ T | 618 | 3 | A â‡’ G | 605 | 6 | C â‡’ A | |
117 | 6 | C â‡’ G | 432 | 22 | G â‡’ C | 642 | 2 | A â‡’ C | 1146 | 8 | A â‡’ G | |
146 | 48 | G â‡’ A | 611 | 10 | C â‡’ T | 643 | 13 | C â‡’ T | 1211 | 14 | A â‡’ C | |
179 | 13 | A â‡’ G | 635 | 13 | G â‡’ A | 644 | 6 | C â‡’ T | 1245 | 2 | C â‡’ T | |
210 | 8 | C â‡’ T | 872 | 3 | A â‡’ G | 716 | 45 | T â‡’ G | 1293 | 2 | C â‡’ T | |
211 | 13 | A â‡’ G | 878-880 | 16 | del. TCG | 717 | 11 | A â‡’ C | 1621 | 44** | C â‡’ T | |
850 | 2 | C â‡’ T | 891 | 4 | G â‡’ A | |||||||
989 | 16 | G â‡’ A | 930 | 50 | C â‡’ T | |||||||
1186 | 35 | G â‡’ C | 982 | 2 | G â‡’ A | |||||||
2247 | 47 | A â‡’ C | 993 | 2 | G â‡’ T | |||||||
Specification of substitutions affecting â‰¥2 isolates | 2533 | 29 | G â‡’ C | 1045 | 19 | G â‡’ A | ||||||
1048 | 64 | A â‡’ G | ||||||||||
1116 | 64 | Aâ‡’ G | ||||||||||
1125 | 2 | C â‡’ A | ||||||||||
1268 | 37 | T â‡’ C | ||||||||||
1282-1285 or 1284-1286* | 63 | del.GCG or GGC | ||||||||||
1324 | 7 | T â‡’ C | ||||||||||
1419 | 2 | A â‡’ G | ||||||||||
1470 | 7 | G â‡’ A | ||||||||||
1510 | 3 | A â‡’ G | ||||||||||
1722 | 2 | G â‡’ T | ||||||||||
1758 | 2 | T â‡’ C | ||||||||||
1761 | 7 | G â‡’ C | ||||||||||
1853 | 4 | G â‡’ A | ||||||||||
1994 | 2 | T â‡’ G |