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Table 4 VNTR–typing and deligotyping results for 30 M. tuberculosis isolates

From: Characterization of extensively drug-resistant Mycobacterium tuberculosis isolates circulating in Siberia

No Beijing type RD-profile VNTR-profile VNTR - type
15 - 1,0,0,1,1,1,1,1,1,1,1,1 2,2,2,3,2,1,4,3,2,5,1,6,3,2,5,1,4,10,3 1
48 - 1,0,0,1,1,1,1,1,1,1,1,1 2,2,2,3,2,2,3,3,2,5,1,5,3,2,5,1,4,10,3 2
158 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 3,2,4,3,3,2,3,3,2,5,1,5,3,3,4,4,5,10,6 3
300 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,2,2,3,3,2,5,1,5,3,3,3,4,5,10,5 4
309 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,2,2,3,3,2,5,1,7,3,3,3,4,5,10,5 5
145 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,5,2,1,3,4,5,10,5 6
169 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,5,2,1,3,4,5,10,5 6
235 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,5,2,1,4,4,5,10,5 7
128 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,5,2,3,3,4,5,10,5 8
236 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,5,3,2,3,4,5,10,5 9
94 M2 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,5,3,3,3,4,5,10,5 10
133 M2 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,5,3,3,3,4,5,10,5 10
20 M33 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,6,3,3,3,4,5,10,5 11
87 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,1,1,3,4,5,10,5 12
275 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,2,1,3,4,5,10,5 13
238 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,1,3,4,5,10,5 14
285 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,1,3,4,5,10,5 14
6 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
9 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
17 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
21 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
37 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
38 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
78 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
276 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
287 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
4548 M11 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 15
96 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,6,2,2,3,2,5,1,3,3,3,3,4,5,10,5 16
171 Unknown 0,0,0,1,0,0,1,1,1,1,1,1 4,2,4,3,6,2,3,3,2,5,1,7,3,2,3,4,5,10,5 17
1084 M11 0,0,0,1,0,0,1,1,1,1,1,1 6,2,4,3,5,2,3,3,2,5,1,7,3,3,3,4,5,10,5 18
  1. Note: Each number in the column “RD-profile” corresponds to the presence (1) or absence (0) of the region of differences (RD105, RD149, RD152, RD174, RD181, RD207, RD150, RD239, RD702, RD711, RD724, RD750) in the corresponding part of the genomic DNA sample. Similarly, in the column “VNTR-profile” each digit represents the number of repeats at a locus: ETRA, ETRB, ETRC, ETRD, ETRE, miru02, miru10, miru16, miru20, miru23, miru24, miru26, miru27, miru39, miru40, Mtub30, Mtub39, Qub4156, and V11.
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