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Table 2 Overview of circulating lineages/genotypes in Mwanza, Tanzania and background characteristics of the infected patients

From: Increased level of acute phase reactants in patients infected with modern Mycobacterium tuberculosis genotypes in Mwanza, Tanzania

Gagneux lineage Brudey lineage Shared-type District Sex TB history Previous TB treatment HIV-infected
    Buzuruga HC (n = 93) Sekou Toure regional Hospital (n = 104) Bugando medical centre (n = 51) Female (n = 98) Male (n = 150) Unknown (n = 3) New (n = 233) Relapse (n = 12) Unknown (n = 3) No (n = 225) Yes (20) No (153) Yes (95)
East African-Indian CAS Unassigned 2 2 3 2 5 1 6 0 0 7 0 4 3
CAS_KILI ST21 17 16 11 18 26 0 42 2 0 40 4 25 19
CAS1_DELHI ST26 4 8 3 4 11 0 15 0 0 15 0 10 5
CAS2 ST288 2 0 0 1 1 0 2 0 0 2 0 2 0
East Asian BEIJING ST1 0 1 2 2 1 0 3 0 0 2 1 2 1
Euro-American F33 Unassigned 2 0 0 2 0 0 2 0 0 2 0 2 0
H1 Unassigned 0 1 0 0 1 0 1 0 0 1 0 1 0
ST218 4 3 0 4 3 0 7 0 0 5 2 5 2
H3 ST50 1 2 1 3 1 0 4 0 0 4 0 2 2
H37Rv ST451 2 1 3 3 3 0 6 0 1 5 0 3 3
LAM1 ST20 0 1 0 0 1 0 1 0 0 1 0 1 0
LAM10_CAM ST61 0 1 1 1 1 0 2 0 0 1 1 0 2
LAM11_ZWE ST1607 0 1 0 1 0 0 1 0 0 1 0 1 0
ST1873 1 0 1 1 1 0 2 0 0 2 0 1 1
ST59 21 19 8 25 23 0 45 3 1 44 3 32 16
LAM4 ST811 1 0 1 1 1 0 2 0 0 2 0 1 1
LAM8 Unassigned 1 0 0 0 1 0 1 0 0 1 0 0 1
LAM9 ST42 2 4 0 2 4 0 6 0 0 5 1 4 2
T1 Unassigned 3 3 0 1 5 0 6 0 0 6 0 5 1
ST102 2 1 0 0 3 0 3 0 0 3 0 2 1
ST1122 0 1 0 0 1 0 0 1 0 0 1 0 1
ST373 0 2 0 0 2 0 2 0 0 1 1 0 2
ST53 7 13 5 7 18 1 21 3 1 21 3 14 11
ST612 0 1 0 1 0 0 1 0 0 1 0 1 0
T2 ST135 0 1 1 1 1 0 2 0 0 2 0 1 1
ST420 2 0 2 1 3 0 3 1 0 4 0 4 0
ST52 0 0 1 0 1 0 1 0 0 1 0 0 1
T3 ST37 1 3 0 1 3 1 3 0 0 4 0 4 0
T3_ETH ST149 0 2 0 2 0 0 2 0 0 2 0 0 2
U ST1570 0 0 1 1 0 0 0 1 0 0 1 0 1
Indo-Oceanic EAI2 Unassigned 1 0 0 1 0 0 1 0 0 1 0 0 1
EAI4 Unassigned 0 1 0 0 1 0 1 0 0 1 0 1 0
EAI5 Unassigned 1 0 0 0 1 0 1 0 0 1 0 1 0
ST126 12 11 6 6 23 0 29 0 0 28 1 17 12
ST1369 1 1 0 1 1 0 2 0 0 2 0 2 0
ST924 1 0 0 1 0 0 1 0 0 1 0 1 0
EAI5 or EAI3 ST8 2 4 1 4 3 0 6 1 0 6 1 4 3