Gagneux lineage | Brudey lineage | Shared-type | District | Sex | TB history | Previous TB treatment | HIV-infected | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  | Buzuruga HC (n = 93) | Sekou Toure regional Hospital (n = 104) | Bugando medical centre (n = 51) | Female (n = 98) | Male (n = 150) | Unknown (n = 3) | New (n = 233) | Relapse (n = 12) | Unknown (n = 3) | No (n = 225) | Yes (20) | No (153) | Yes (95) |
East African-Indian | CAS | Unassigned | 2 | 2 | 3 | 2 | 5 | 1 | 6 | 0 | 0 | 7 | 0 | 4 | 3 |
CAS_KILI | ST21 | 17 | 16 | 11 | 18 | 26 | 0 | 42 | 2 | 0 | 40 | 4 | 25 | 19 | |
CAS1_DELHI | ST26 | 4 | 8 | 3 | 4 | 11 | 0 | 15 | 0 | 0 | 15 | 0 | 10 | 5 | |
CAS2 | ST288 | 2 | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | |
East Asian | BEIJING | ST1 | 0 | 1 | 2 | 2 | 1 | 0 | 3 | 0 | 0 | 2 | 1 | 2 | 1 |
Euro-American | F33 | Unassigned | 2 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 |
H1 | Unassigned | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
ST218 | 4 | 3 | 0 | 4 | 3 | 0 | 7 | 0 | 0 | 5 | 2 | 5 | 2 | ||
H3 | ST50 | 1 | 2 | 1 | 3 | 1 | 0 | 4 | 0 | 0 | 4 | 0 | 2 | 2 | |
H37Rv | ST451 | 2 | 1 | 3 | 3 | 3 | 0 | 6 | 0 | 1 | 5 | 0 | 3 | 3 | |
LAM1 | ST20 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
LAM10_CAM | ST61 | 0 | 1 | 1 | 1 | 1 | 0 | 2 | 0 | 0 | 1 | 1 | 0 | 2 | |
LAM11_ZWE | ST1607 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
ST1873 | 1 | 0 | 1 | 1 | 1 | 0 | 2 | 0 | 0 | 2 | 0 | 1 | 1 | ||
ST59 | 21 | 19 | 8 | 25 | 23 | 0 | 45 | 3 | 1 | 44 | 3 | 32 | 16 | ||
LAM4 | ST811 | 1 | 0 | 1 | 1 | 1 | 0 | 2 | 0 | 0 | 2 | 0 | 1 | 1 | |
LAM8 | Unassigned | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | |
LAM9 | ST42 | 2 | 4 | 0 | 2 | 4 | 0 | 6 | 0 | 0 | 5 | 1 | 4 | 2 | |
T1 | Unassigned | 3 | 3 | 0 | 1 | 5 | 0 | 6 | 0 | 0 | 6 | 0 | 5 | 1 | |
ST102 | 2 | 1 | 0 | 0 | 3 | 0 | 3 | 0 | 0 | 3 | 0 | 2 | 1 | ||
ST1122 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | ||
ST373 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 1 | 1 | 0 | 2 | ||
ST53 | 7 | 13 | 5 | 7 | 18 | 1 | 21 | 3 | 1 | 21 | 3 | 14 | 11 | ||
ST612 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | ||
T2 | ST135 | 0 | 1 | 1 | 1 | 1 | 0 | 2 | 0 | 0 | 2 | 0 | 1 | 1 | |
ST420 | 2 | 0 | 2 | 1 | 3 | 0 | 3 | 1 | 0 | 4 | 0 | 4 | 0 | ||
ST52 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | ||
T3 | ST37 | 1 | 3 | 0 | 1 | 3 | 1 | 3 | 0 | 0 | 4 | 0 | 4 | 0 | |
T3_ETH | ST149 | 0 | 2 | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 2 | 0 | 0 | 2 | |
U | ST1570 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | |
Indo-Oceanic | EAI2 | Unassigned | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 |
EAI4 | Unassigned | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
EAI5 | Unassigned | 1 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | |
ST126 | 12 | 11 | 6 | 6 | 23 | 0 | 29 | 0 | 0 | 28 | 1 | 17 | 12 | ||
ST1369 | 1 | 1 | 0 | 1 | 1 | 0 | 2 | 0 | 0 | 2 | 0 | 2 | 0 | ||
ST924 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1 | 0 | ||
EAI5 or EAI3 | ST8 | 2 | 4 | 1 | 4 | 3 | 0 | 6 | 1 | 0 | 6 | 1 | 4 | 3 |