Genus | Gene | Sequence of primers (5´ → 3´) | Amplicon size (bp) |
---|---|---|---|
Cryptosporidium | SSUrRNA | CryF1: TTCTAGAGCTAATACATGCG | ~1325 |
CryR1: CCATTTCCTTCGAAACAGGA | |||
CryF2: GGAAGGGTTGTATTTATTAGATAAAG | ~840 | ||
CryR2: CTCATAAGGTGCTGAAGGAGTA | |||
Microsporidia | SSUrRNA | EF1: GATGGTCATAGGGATGAAGAGCTT | ~1200 |
ER1: AATACAGGATCACTTGGATCCGT | |||
EF2: AGGGATGAAGAGCTTCGGCTCTG | ~600 | ||
ER2: AATATCCCTAATACAGGATCACT | |||
Giardia | TPI | TPIF1: AAATIATGCCTGCTCGTCG | ~605 |
TPIR1: CAAACCTTITCCGCAAACC | |||
TPIF2: CCCTTCATCGGIGGTAACTT | ~530 | ||
TPIR2: GTGGCCACCACICCCGTGCC | |||
Cyclospora | 18SrRNA | CYCLF1: AATGTAAAACCCTTCCAGAGTAAC | ~1000 |
CYCLR1: GCAATA ATCTATCCCCATCACG | |||
CYCLF2: AATTCCAGCTCCAATAGTGTAT | ~500 | ||
 |  | CYCLR2: CAGGAGAAGCCAAGGTAGGCRTTT |  |